View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7003_high_20 (Length: 269)
Name: NF7003_high_20
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 13286736 - 13286980
Alignment:
| Q |
19 |
aaaatggattactgtggaggaaagattggtggaagtgatcaaagaggtggtgggccttgtggtgcttgcaagtttttgagaagaaaatgtgtaaaaggtt |
118 |
Q |
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| T |
13286736 |
aaaatggattactgtggaggaaagattggtggaagtgatcaaagaggtggtgggccttgtggtgcttgcaagtttttgaggagaaagtgtgtaaaaggtt |
13286835 |
T |
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| Q |
119 |
gcatatttgcaccatattttgattcagaccaaggaacggttcattttgcagcagttcataaagtgtttggtgctagtaatgcctctaagttactcatgcg |
218 |
Q |
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| T |
13286836 |
gcatatttgcaccatattttgattcagaccaaggaacggttcattttgcagcagttcataaagtgtttggtgctagtaatgcctctaagttactcatgcg |
13286935 |
T |
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| Q |
219 |
tattccagctcataaacgtcttgatgctgttgttactctctgcta |
263 |
Q |
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| T |
13286936 |
tattccagctcataaacgtcttgatgctgttgttactctttgcta |
13286980 |
T |
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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 263
Target Start/End: Complemental strand, 28102315 - 28102110
Alignment:
| Q |
64 |
ggtggtgggccttgtggtgcttgcaagtttttgagaagaaaatgtgtaaaaggttg---catatttgcaccatattttgattca---gaccaaggaacgg |
157 |
Q |
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| T |
28102315 |
ggtggtggaccttgtggagcctgcaagtttttgaggagaaagtgtgtgaaaggttgttgcatatttgcaccatattttgagtcatcaggtcaaggaagtg |
28102216 |
T |
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| Q |
158 |
ttcattttgcagcagttcataaagtgtttggtgctagtaatgcctctaagttactcatgcgtattccagctcataaacgtcttgatgctgttgttactct |
257 |
Q |
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| T |
28102215 |
ctcattttgctgcagttcataaggtttttggtgctagcaatgctgctaaactactcacacgtattccagttcataagcgtcttgatgctgttgttactct |
28102116 |
T |
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| Q |
258 |
ctgcta |
263 |
Q |
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| T |
28102115 |
ttgcta |
28102110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 38731399 - 38731487
Alignment:
| Q |
163 |
tttgcagcagttcataaagtgtttggtgctagtaatgcctctaagttactcatgcgtattccagctcataaacgtcttgatgctgttgt |
251 |
Q |
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| T |
38731399 |
tttgcagctattcataaagtgtttggtgctagcaatgtttctaagttgctcttgcatataccagctcatgaacgttgtgaagctgttgt |
38731487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 30903972 - 30904037
Alignment:
| Q |
73 |
ccttgtggtgcttgcaagtttttgagaagaaaatgtgtaaaaggttgcatatttgcaccatatttt |
138 |
Q |
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| T |
30903972 |
ccttgtggagcttgcaaatttttgagaagaaaatgtataagaggttgtgtttttgcaccttatttt |
30904037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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