View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7003_high_21 (Length: 264)

Name: NF7003_high_21
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7003_high_21
NF7003_high_21
[»] chr5 (19 HSPs)
chr5 (20-255)||(13482931-13483162)
chr5 (131-215)||(28591131-28591215)
chr5 (139-222)||(16611758-16611841)
chr5 (117-215)||(546053-546151)
chr5 (141-215)||(8074483-8074557)
chr5 (114-202)||(18400194-18400283)
chr5 (131-215)||(8075850-8075934)
chr5 (159-227)||(9538054-9538122)
chr5 (131-215)||(25590453-25590536)
chr5 (136-215)||(4592888-4592967)
chr5 (161-222)||(2464721-2464782)
chr5 (170-227)||(18004699-18004756)
chr5 (131-215)||(2466791-2466875)
chr5 (139-215)||(19182980-19183056)
chr5 (132-187)||(9537046-9537101)
chr5 (148-215)||(19186237-19186304)
chr5 (160-209)||(544699-544748)
chr5 (169-214)||(13483174-13483219)
chr5 (161-222)||(16979044-16979105)
[»] chr4 (15 HSPs)
chr4 (114-222)||(53770337-53770446)
chr4 (114-215)||(53771066-53771168)
chr4 (141-222)||(4703227-4703308)
chr4 (117-215)||(31844729-31844828)
chr4 (131-215)||(47878501-47878585)
chr4 (170-221)||(19050299-19050350)
chr4 (128-215)||(44158523-44158610)
chr4 (148-215)||(48740037-48740104)
chr4 (161-215)||(26172959-26173013)
chr4 (141-215)||(47874596-47874670)
chr4 (170-210)||(19051253-19051293)
chr4 (132-215)||(54574448-54574531)
chr4 (131-222)||(39868944-39869033)
chr4 (148-215)||(42278088-42278155)
chr4 (161-215)||(54574822-54574876)
[»] chr1 (19 HSPs)
chr1 (118-215)||(7945571-7945669)
chr1 (114-221)||(22856684-22856792)
chr1 (117-222)||(5782421-5782527)
chr1 (139-215)||(5783126-5783202)
chr1 (141-211)||(7944187-7944257)
chr1 (148-222)||(9341035-9341109)
chr1 (160-222)||(10333196-10333258)
chr1 (117-215)||(32665787-32665886)
chr1 (131-206)||(51450023-51450098)
chr1 (142-220)||(52440571-52440649)
chr1 (159-215)||(25037928-25037984)
chr1 (159-215)||(25043140-25043196)
chr1 (160-215)||(3117700-3117755)
chr1 (160-215)||(6612470-6612525)
chr1 (160-211)||(6614000-6614051)
chr1 (117-211)||(10332993-10333088)
chr1 (160-211)||(44020037-44020088)
chr1 (150-215)||(9339687-9339752)
chr1 (170-215)||(34088486-34088531)
[»] chr7 (22 HSPs)
chr7 (131-215)||(10899090-10899174)
chr7 (114-220)||(8374918-8375025)
chr7 (139-222)||(48788682-48788765)
chr7 (131-213)||(44333161-44333243)
chr7 (141-215)||(48647460-48647534)
chr7 (131-215)||(35727721-35727805)
chr7 (139-222)||(48646079-48646162)
chr7 (139-215)||(13578337-13578413)
chr7 (139-220)||(12220053-12220134)
chr7 (139-215)||(7258305-7258381)
chr7 (131-215)||(8048801-8048885)
chr7 (159-215)||(46286553-46286609)
chr7 (148-211)||(8375604-8375667)
chr7 (117-215)||(43457464-43457563)
chr7 (148-222)||(30925018-30925092)
chr7 (160-209)||(34704960-34705009)
chr7 (162-215)||(44530628-44530681)
chr7 (142-215)||(45583717-45583790)
chr7 (160-211)||(33607644-33607695)
chr7 (141-215)||(48777288-48777362)
chr7 (131-215)||(39708125-39708209)
chr7 (131-211)||(42477403-42477482)
[»] chr3 (20 HSPs)
chr3 (131-215)||(17700540-17700624)
chr3 (117-215)||(45600956-45601054)
chr3 (114-215)||(47118068-47118170)
chr3 (131-215)||(48573007-48573091)
chr3 (141-215)||(11773068-11773142)
chr3 (114-215)||(33428452-33428554)
chr3 (159-215)||(48574476-48574532)
chr3 (122-224)||(19114545-19114648)
chr3 (131-202)||(52318347-52318418)
chr3 (147-215)||(36280334-36280402)
chr3 (148-215)||(2591666-2591733)
chr3 (160-215)||(3671089-3671144)
chr3 (128-215)||(20464088-20464175)
chr3 (148-211)||(36278991-36279054)
chr3 (141-215)||(17701936-17702010)
chr3 (139-208)||(47427890-47427959)
chr3 (131-215)||(34263827-34263911)
chr3 (148-222)||(49261547-49261618)
chr3 (132-215)||(55389486-55389569)
chr3 (141-215)||(2592024-2592098)
[»] chr6 (3 HSPs)
chr6 (117-215)||(30748006-30748105)
chr6 (131-215)||(31218977-31219061)
chr6 (114-222)||(31219170-31219279)
[»] chr2 (22 HSPs)
chr2 (131-222)||(31091537-31091628)
chr2 (131-212)||(5915012-5915093)
chr2 (131-220)||(17466840-17466929)
chr2 (141-222)||(24458092-24458173)
chr2 (131-215)||(32766256-32766340)
chr2 (131-215)||(40000351-40000435)
chr2 (131-222)||(15441981-15442072)
chr2 (148-215)||(17330247-17330314)
chr2 (141-215)||(2910132-2910206)
chr2 (159-215)||(14704056-14704112)
chr2 (139-215)||(38985006-38985082)
chr2 (131-211)||(39015027-39015107)
chr2 (160-215)||(31814361-31814416)
chr2 (160-215)||(32764989-32765044)
chr2 (117-209)||(31090171-31090264)
chr2 (131-215)||(24459463-24459547)
chr2 (152-215)||(17466084-17466147)
chr2 (114-215)||(5914309-5914410)
chr2 (170-215)||(7073700-7073745)
chr2 (170-215)||(21733788-21733833)
chr2 (160-222)||(39016393-39016451)
chr2 (163-215)||(34037690-34037742)
[»] chr8 (10 HSPs)
chr8 (159-222)||(5965452-5965515)
chr8 (160-215)||(5736893-5736948)
chr8 (117-215)||(32898462-32898561)
chr8 (141-215)||(35177427-35177501)
chr8 (165-222)||(45476218-45476275)
chr8 (117-215)||(41754812-41754910)
chr8 (159-215)||(35178821-35178877)
chr8 (170-221)||(28619050-28619101)
chr8 (158-212)||(1951991-1952045)
chr8 (134-208)||(41754023-41754097)
[»] scaffold0767 (1 HSPs)
scaffold0767 (160-222)||(5650-5712)
[»] scaffold0034 (1 HSPs)
scaffold0034 (141-215)||(116087-116161)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 13482931 - 13483162
Alignment:
Q  20 tagtgtgatttggtgctgtctgaaaaagtgctggtgtaaagtgaattcaatgaatgaaacactgtcaccatttcaataaacataaattcaggacatggtc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  13482931 tagtgtgatttggtgctgtctgaaaaagtgctggtgtaaagtgaattcaatgaatgaaacactgtcaccatttcaataaacataaattcaggaaatgatc 13483030  T
Q  120 attttagtcccgactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtc 219  Q
    | |||||||||||||||||| ||||| |||| |||| |||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  13483031 actttagtcccgactctgtatctcgcattcagataggttcctgactcatgattaaatataaagaagtctcttactctgcactttcgttatcacttttgtc 13483130  T
Q  220 tcttatgtgcgtgccacaatcacttaatagaattat 255  Q
    ||||||    ||||||||||||||||| ||||||||    
T  13483131 tcttat----gtgccacaatcacttaacagaattat 13483162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 28591215 - 28591131
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| |||||||| |||||||| | |||||||||| |||||||||||| || || || ||||||||||| | ||||||||||    
T  28591215 gactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataaatccctgactctgcacttcctttatcacttt 28591131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 16611758 - 16611841
Alignment:
Q  139 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    |||||||| |||||||| |  ||||||||| |||||||||||||||| |||| | | ||||||| |||||||||||| ||||||    
T  16611758 acctcgctgtcacataggtctctgactcaggattaaatacaaagaagcctctgattatgcacttccgttatcactttagtctct 16611841  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 546151 - 546053
Alignment:
Q  117 gtcattttagtcccgactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||| ||||||||||| | || | |||||| |||||||| | |||||||||| |||||||||| | |||||  | ||||||||||| ||||||||||||    
T  546151 gtcactttagtcccgattttgcagctcgctgtcacataggtccctgactcaggattaaatacagataagtccttgactctgcacttccgttatcacttt 546053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 8074483 - 8074557
Alignment:
Q  141 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||| |||||||  | |||||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  8074483 ctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcacttt 8074557  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 18400194 - 18400283
Alignment:
Q  114 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactt 202  Q
    ||||||| ||||||||| ||||||| ||||| || |||||||| | | |||||||| |||||||| ||||||||| || |||||||||||    
T  18400194 atggtcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtcactgactctgcactt 18400283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 8075934 - 8075850
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| |||||||| | | |||||| ||||| |||  |||||||||||| |||| ||| | ||||||||||||||||||||||    
T  8075934 gactctgcacctcgctgttagatagatccctgattcaagattaaatacaaaaaagtatctgattctgcactttcgttatcacttt 8075850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 9538122 - 9538054
Alignment:
Q  159 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctcttatgt 227  Q
    |||||||||| ||||||||||||||||||||| | | ||||||| |||||||| ||| |||||| ||||    
T  9538122 cctgactcaggattaaatacaaagaagtctctgattgtgcacttccgttatcattttagtctctgatgt 9538054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 25590453 - 25590536
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| |||||||| |||||||| | |||||||| || ||||||||||| |||||||| | |||||||||  |||||||||||    
T  25590453 gactctgcacctcgctgtcacataggtccctgactcgga-ttaaatacaaataagtctctgattctgcacttctgttatcacttt 25590536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 4592888 - 4592967
Alignment:
Q  136 tgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||| |||||| |||||||  | |||||||||  |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  4592888 tgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatcacttt 4592967  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 2464721 - 2464782
Alignment:
Q  161 tgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    |||||||  |||||||||||| ||||| || ||||||||||| |||||||||||| ||||||    
T  2464721 tgactcatgattaaatacaaataagtccctaactctgcacttacgttatcactttagtctct 2464782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 18004699 - 18004756
Alignment:
Q  170 attaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctcttatgt 227  Q
    |||||||||||||| |||| | ||||||||||| |||||||||||| |||||| ||||    
T  18004699 attaaatacaaagaggtctatgactctgcacttccgttatcactttagtctctgatgt 18004756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 2466875 - 2466791
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| |||||||| |||||||| |   ||| |||| |||||||| ||| ||||| || ||||||||||| ||||||||||||    
T  2466875 gactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtccctaactctgcacttccgttatcacttt 2466791  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 19182980 - 19183056
Alignment:
Q  139 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||| |||||||| |  ||||||||| |||||||||||| ||||  || ||||| ||||| ||||||||||||    
T  19182980 acctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatcacttt 19183056  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 9537046 - 9537101
Alignment:
Q  132 actctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtc 187  Q
    |||||| |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  9537046 actctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagtc 9537101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 19186304 - 19186237
Alignment:
Q  148 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||| | ||||||| || |||||||||||| |||||||| ||||| || || ||||||||||||    
T  19186304 tcacataggtccctgacttaggattaaatacaaacaagtctctgactctacatttccgttatcacttt 19186237  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 544699 - 544748
Alignment:
Q  160 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttat 209  Q
    ||||||||| |||||||||||| ||||| || ||||||||||| ||||||    
T  544699 ctgactcaggattaaatacaaataagtcactgactctgcacttccgttat 544748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 13483219 - 13483174
Alignment:
Q  169 aattaaatacaaagaagtctcttactctgcactttcgttatcactt 214  Q
    ||||||||||||| |||||||| ||| ||||||| |||||||||||    
T  13483219 aattaaatacaaacaagtctctgactttgcacttccgttatcactt 13483174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 16979044 - 16979105
Alignment:
Q  161 tgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    |||||||||||||||| |||| ||||| || |||||| |||| |||||||| ||| ||||||    
T  16979044 tgactcagaattaaatgcaaataagtccctaactctgtacttacgttatcattttagtctct 16979105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 53770337 - 53770446
Alignment:
Q  114 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 212  Q
    ||||||| ||||||| | ||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| | |||||||    
T  53770337 atggtcactttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaagaagtctatgactctgcacttccattatcac 53770436  T
Q  213 tttcgtctct 222  Q
    | | ||||||    
T  53770437 tctagtctct 53770446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 53771168 - 53771066
Alignment:
Q  114 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 212  Q
    ||||||| ||||||||| ||||||| |||||| | |||||||| | ||||||||||||||||||||||||||| | || ||||||||||| |||||||||    
T  53771168 atggtcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagcccctgactctgcacttccgttatcac 53771069  T
Q  213 ttt 215  Q
    |||    
T  53771068 ttt 53771066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 4703308 - 4703227
Alignment:
Q  141 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    |||||| |||||||| | ||| |||||||||||||||||||||||||| | ||| | ||||| |||||||||||| ||||||    
T  4703308 ctcgctgtcacataggtccctaactcagaattaaatacaaagaagtctttgactgtacacttccgttatcactttagtctct 4703227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 31844729 - 31844828
Alignment:
Q  117 gtcattttagtcccga-ctctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||| ||||||||| | ||||| |||||||| |||||||| | |||||||||| |||||||||||| ||||| || ||||| ||||| | ||||||||||    
T  31844729 gtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtccctaactctacacttcccttatcacttt 31844828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 47878585 - 47878501
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| |||||||| | |||||| | |||||||| | |||||||||||| ||||| || ||||| ||||| ||||||||||||    
T  47878585 gactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtccctgactctacacttccgttatcacttt 47878501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 19050299 - 19050350
Alignment:
Q  170 attaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctc 221  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||| |||||    
T  19050299 attaaatacaaagaagtctcggactctgcacttccgttatcactttagtctc 19050350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 44158523 - 44158610
Alignment:
Q  128 cccgactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||||| |||||| | | ||| || |||||||||||| |||||||||||||||||| || |||||  ||||| ||||| |||||    
T  44158523 cccgactctgcacctcgttgttacagaggttcctgactcaggattaaatacaaagaagtccctgactctatacttttgttattacttt 44158610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 48740104 - 48740037
Alignment:
Q  148 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||| ||||| ||||||||| ||||||||||||||||||| |  |||||||||||  |||||||||||    
T  48740104 tcacgtagatccctgactcataattaaatacaaagaagtccccaactctgcacttctgttatcacttt 48740037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 26173013 - 26172959
Alignment:
Q  161 tgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||  |||||||||||| |||||||| ||||||||||| ||||||||||||    
T  26173013 tgactcaagattaaatacaaataagtctctgactctgcacttccgttatcacttt 26172959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 47874596 - 47874670
Alignment:
Q  141 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||| |||||||| | |||||||||  |||||||||||| ||||| || | ||||||||| ||||||||||||    
T  47874596 ctcgctatcacataggtccctgactcaagattaaatacaaataagtccctgattctgcacttccgttatcacttt 47874670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 19051293 - 19051253
Alignment:
Q  170 attaaatacaaagaagtctcttactctgcactttcgttatc 210  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  19051293 attaaatacaaagaagtctctgactctacactttcgttatc 19051253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 54574448 - 54574531
Alignment:
Q  132 actctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctctt-actctgcactttcgttatcacttt 215  Q
    |||||| | |||||| |||||||| |  ||||||||| |||||||||||| |||| |||| ||||||||||| ||||||||||||    
T  54574448 actctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagt-tcttaactctgcacttccgttatcacttt 54574531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 39868944 - 39869033
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    ||||||| |||||||| | ||| || | ||||||||| ||||||||||||| |||| ||  ||||||||||| |||||||||||| ||||||    
T  39868944 gactctgcacctcgctgttacaaaggtccctgactcataattaaatacaaacaagt-tc-gactctgcacttccgttatcactttagtctct 39869033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 42278088 - 42278155
Alignment:
Q  148 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||| | |||||||| | |||||||||||| ||||  || ||||||||||| ||||||||||||    
T  42278088 tcacataggtccctgactcgggattaaatacaaataagttcctgactctgcacttccgttatcacttt 42278155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 54574876 - 54574822
Alignment:
Q  161 tgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||| |||||||||||| || ||||| |||||||||||  |||||||||||    
T  54574876 tgactcaggattaaatacaaataaatctctaactctgcacttctgttatcacttt 54574822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 7945669 - 7945571
Alignment:
Q  118 tcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| ||||| ||||||| |||||||| |||||||| |||||||||||| |||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  7945669 tcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttccgttatcacttt 7945571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 22856684 - 22856792
Alignment:
Q  114 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 212  Q
    ||||||| ||||||| | ||||||| ||| || | | ||| |||||| |||||||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  22856684 atggtcactttagtcactgactctgcaccacgttgttacaaagattcttgactcaggattaaatacaaagaagtctctaactctgcacttccgttatcac 22856783  T
Q  213 tttcgtctc 221  Q
    ||| |||||    
T  22856784 tttagtctc 22856792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 5782421 - 5782527
Alignment:
Q  117 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||||||||| ||||||| |||||||| |||||||| |  ||||||||  ||||||||||||||||||||| | | ||||||| | ||||||||||    
T  5782421 gtcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctgattatgcacttcccttatcacttt 5782520  T
Q  216 cgtctct 222  Q
     ||||||    
T  5782521 agtctct 5782527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 5783202 - 5783126
Alignment:
Q  139 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||| |||||||||| |  ||||||||||||||||||||||||||  | ||||||||||| ||||||||||||    
T  5783202 acctcgctgtcacatagatcctcgactcagaattaaatacaaagaagtccatgactctgcacttccgttatcacttt 5783126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 7944187 - 7944257
Alignment:
Q  141 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 211  Q
    |||||| |||||||| | ||||||||| ||||||||||||| |||||  | ||||||||||||||||||||    
T  7944187 ctcgctgtcacataggtccctgactcaaaattaaatacaaataagtccttgactctgcactttcgttatca 7944257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 9341109 - 9341035
Alignment:
Q  148 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    |||||||| | |||||||||| |||||||||||| |||||||| ||| |||||||  ||||||||||| ||||||    
T  9341109 tcacataggtccctgactcaggattaaatacaaataagtctctgactttgcacttctgttatcactttagtctct 9341035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 10333258 - 10333196
Alignment:
Q  160 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    ||||||||  |||||||||||| |||||||| ||||||||||| |||||||||||| ||||||    
T  10333258 ctgactcaagattaaatacaaataagtctctgactctgcacttccgttatcactttagtctct 10333196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 32665886 - 32665787
Alignment:
Q  117 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||| ||||||||| || |||| | |||||| |||||||| |  ||||||||  |||||||||||| |||||| | ||||||||||| ||||||||||||    
T  32665886 gtcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgcacttccgttatcacttt 32665787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 51450023 - 51450098
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgt 206  Q
    ||||||| |||||||  ||||| || ||||| ||||| |||||||| ||||||||| ||| |||||||||||||||    
T  51450023 gactctgcacctcgccgtcacaaaggttcctaactcataattaaatgcaaagaagtttctgactctgcactttcgt 51450098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 52440649 - 52440571
Alignment:
Q  142 tcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtct 220  Q
    ||||| |||||||| | ||||| |||| |||||||| ||| |||||||| ||||||||||| | |||||||||| ||||    
T  52440649 tcgctgtcacataggtccctgagtcaggattaaatataaataagtctctgactctgcacttccattatcactttagtct 52440571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 25037928 - 25037984
Alignment:
Q  159 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||||  |||||||||||||||||| || |||||| |||| ||||||||||||    
T  25037928 cctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcacttt 25037984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 25043140 - 25043196
Alignment:
Q  159 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||||  |||||||||||||||||| || |||||| |||| ||||||||||||    
T  25043140 cctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcacttt 25043196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 3117700 - 3117755
Alignment:
Q  160 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||||  ||||||||||||||| ||||| ||||| ||||| ||||||||||||    
T  3117700 ctgactcaagattaaatacaaagaaatctctgactctccacttccgttatcacttt 3117755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 6612470 - 6612525
Alignment:
Q  160 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||||  |||||||||||| |||||||| ||||||||||| | ||||||||||    
T  6612470 ctgactcatgattaaatacaaacaagtctctgactctgcacttccattatcacttt 6612525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 6614051 - 6614000
Alignment:
Q  160 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 211  Q
    ||||||||| |||||||||||| |||||||| |||||||||||  |||||||    
T  6614051 ctgactcaggattaaatacaaataagtctctgactctgcacttcagttatca 6614000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 10332993 - 10333088
Alignment:
Q  117 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 211  Q
    |||| ||||||||| |||| || |||||| | |||||||| | | ||| |||| |||||||| ||| ||||| |||||||||||||| ||||||||    
T  10332993 gtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtcccttactctgcacttccgttatca 10333088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 44020037 - 44020088
Alignment:
Q  160 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 211  Q
    ||||||||  |||||||| |||||||||||| ||||||||||| ||||||||    
T  44020037 ctgactcaagattaaatataaagaagtctctgactctgcacttacgttatca 44020088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 9339687 - 9339752
Alignment:
Q  150 acatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||| | |||||||||| |||||||||||| || || |  ||||||||||| ||||||||||||    
T  9339687 acataggtccctgactcaggattaaatacaaataaatccccgactctgcacttccgttatcacttt 9339752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 34088531 - 34088486
Alignment:
Q  170 attaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||||||||||||||||| ||||||||||| |  |||||||||    
T  34088531 attaaatacaaagaagtctctgactctgcacttccactatcacttt 34088486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 10899174 - 10899090
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| |||||||| |||||||||| | |||| ||| |||||||||||| |||||||| ||||||||||| ||||||||||||    
T  10899174 gactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctgactctgcacttccgttatcacttt 10899090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 8374918 - 8375025
Alignment:
Q  114 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 212  Q
    ||||| ||||||||||| ||||||| |||||||| |||||||| |  |||||||||||||||||||||| |||| ||| | | ||||||| |||||||||    
T  8374918 atggtgattttagtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctgattttgcacttccgttatcac 8375017  T
Q  213 tttcgtct 220  Q
    ||| ||||    
T  8375018 tttagtct 8375025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 48788765 - 48788682
Alignment:
Q  139 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    |||||||| |||||||| | ||||||||| ||||||||| ||| |||||||| ||||||||||| |||||||||||| ||||||    
T  48788765 acctcgctgtcacataggtccctgactcataattaaatataaataagtctctgactctgcacttccgttatcactttagtctct 48788682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 44333161 - 44333243
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcact 213  Q
    ||||||| |||||||| |||||||| | |||||||||  |||||||||||| |||||||| ||||||||||| ||||||||||    
T  44333161 gactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgttatcact 44333243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 48647534 - 48647460
Alignment:
Q  141 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||| |||||||| | |||||||||| |||||||||||| |||||||| |||||||||||| |||||||||||    
T  48647534 ctcgctatcacataggtccctgactcaggattaaatacaaataagtctctcactctgcacttttgttatcacttt 48647460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 35727721 - 35727805
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| |||||||| |||||||| | |||||||||| |||||||| ||| |||||||| ||||||||| | ||||||||||||    
T  35727721 gactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacatccgttatcacttt 35727805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 48646079 - 48646162
Alignment:
Q  139 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    |||||||| |||||||| | |||||||||| |||||||||||| ||||| || ||||| ||||| |||||||||||| ||||||    
T  48646079 acctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgttatcactttagtctct 48646162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 13578413 - 13578337
Alignment:
Q  139 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||| ||| | ||||  |||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||    
T  13578413 acctcgctgtcataaagatcactgactcagaattaaatacaaataagtcactgactctgcacttccgttatcacttt 13578337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 12220053 - 12220134
Alignment:
Q  139 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtct 220  Q
    |||||| | ||||| ||||||||||||||  |||||||| |||||||||||| |||||||||||  | ||||||||| ||||    
T  12220053 acctcgttgtcacaaagattcctgactcaagattaaatagaaagaagtctctgactctgcacttctgatatcactttagtct 12220134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 7258305 - 7258381
Alignment:
Q  139 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||| | |||||||| | ||| |||||| |||||||||||| |||||||| |||||||||||  |||||||||||    
T  7258305 acctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctgttatcacttt 7258381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 8048885 - 8048801
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| ||||||||  |||| || |  ||||||||  ||||||||||||||||||||  ||||||||||| ||||||||||||    
T  8048885 gactctgcacctcgctgacacaaaggtctctgactcaagattaaatacaaagaagtctccgactctgcacttccgttatcacttt 8048801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 46286553 - 46286609
Alignment:
Q  159 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||||| |||||||||||| |||||||| |||||||||||  |||||||||||    
T  46286553 cctgactcaggattaaatacaaataagtctctgactctgcacttctgttatcacttt 46286609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 8375667 - 8375604
Alignment:
Q  148 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 211  Q
    |||||||| | |||||||||  ||||||||||||||||| ||| ||||||||||| ||||||||    
T  8375667 tcacataggtccctgactcatgattaaatacaaagaagtttctgactctgcacttccgttatca 8375604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 43457464 - 43457563
Alignment:
Q  117 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||| ||||||||| || |||| | |||||| || ||||| | |||||||||| |||||||||||| ||||| |  ||||||||||| ||||||||||||    
T  43457464 gtcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtccccgactctgcacttccgttatcacttt 43457563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 30925092 - 30925018
Alignment:
Q  148 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    |||||||| | | |||||||| |||||||||||| |||||||| ||| ||||||| |||||| ||||| ||||||    
T  30925092 tcacataggtccttgactcaggattaaatacaaataagtctctgactatgcacttccgttattactttagtctct 30925018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 34704960 - 34705009
Alignment:
Q  160 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttat 209  Q
    ||||||||| ||||||||||||||||||||| ||| || |||||||||||    
T  34704960 ctgactcaggattaaatacaaagaagtctctgactgtgtactttcgttat 34705009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 44530681 - 44530628
Alignment:
Q  162 gactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| |||||||| ||| |||||||| ||||||||||| ||||||||||||    
T  44530681 gactcaggattaaatataaataagtctctgactctgcacttccgttatcacttt 44530628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 45583717 - 45583790
Alignment:
Q  142 tcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||| |||||||| | ||||||||||||||||||||| | ||||  || | ||||||||| ||||||||||||    
T  45583717 tcgctatcacataggtccctgactcagaattaaatacagataagttcctgattctgcacttccgttatcacttt 45583790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 33607695 - 33607644
Alignment:
Q  160 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 211  Q
    |||| |||| ||||||||||||||||||||| | ||||||||| ||||||||    
T  33607695 ctgattcaggattaaatacaaagaagtctctgattctgcacttccgttatca 33607644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 48777288 - 48777362
Alignment:
Q  141 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||| |||||||  | |||||||||  |||||||||||| || || || ||||||||||| ||||||||||||    
T  48777288 ctcgctgtcacataagtccctgactcatgattaaatacaaataattccctgactctgcacttccgttatcacttt 48777362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 39708125 - 39708209
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||||||||||  ||||| || | | |||||||  ||| |||||||||||||| |  ||| ||||||| ||||||||||||    
T  39708125 gactctgtacctcgccgtcacaaaggtccatgactcaagattgaatacaaagaagtcaccgactttgcacttccgttatcacttt 39708209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 42477403 - 42477482
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 211  Q
    ||||||| |||||| | || ||||| |  ||||||||| |||||||||||| ||||| || ||||||||||| ||||||||    
T  42477403 gactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagtc-ctgactctgcacttccgttatca 42477482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 17700540 - 17700624
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| |||||| | |||||||| |||||||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  17700540 gactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcacttt 17700624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 45601054 - 45600956
Alignment:
Q  117 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||| ||||||||| |||||||| ||||||| |||||||| | ||||| |||| |||||||||||||||||| || ||||||||||| ||||||||||||    
T  45601054 gtcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagtc-ctgactctgcacttccgttatcacttt 45600956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 47118170 - 47118068
Alignment:
Q  114 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 212  Q
    ||||||| ||||||||| ||||||| |||||| | ||| |||  | || ||||||| ||||||| ||||||||||||| |||||||||||||||||||||    
T  47118170 atggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctgactctgcactttcgttatcac 47118071  T
Q  213 ttt 215  Q
    |||    
T  47118070 ttt 47118068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 48573007 - 48573091
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| |||||| | |||||||| | |||||||||| |||||||||||| ||| |||| ||||||||||| ||||||||||||    
T  48573007 gactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcacttccgttatcacttt 48573091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 11773142 - 11773068
Alignment:
Q  141 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||| |||||||| | |||||||||| |||||||||||| |||||||| ||||| ||||| ||||||||||||    
T  11773142 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtctctgactctacacttccgttatcacttt 11773068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 33428554 - 33428452
Alignment:
Q  114 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 212  Q
    ||||||| ||| ||||| ||||||| |||||| | |||||||| | |||||||||||||||||||||||||||||  | |||||||| || |||| ||||    
T  33428554 atggtcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtccttgactctgcatttccgttgtcac 33428455  T
Q  213 ttt 215  Q
    |||    
T  33428454 ttt 33428452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 48574532 - 48574476
Alignment:
Q  159 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||    
T  48574532 cctgactcaggattaaatacaaataagtccctgactctgcactttcgttatcacttt 48574476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 19114545 - 19114648
Alignment:
Q  122 tttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtct 220  Q
    ||||||||| ||||||| || ||| | ||||| || | |||||||||  |||||||||||||||||| || ||| ||||||| |||||||||||| ||||    
T  19114545 tttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcacttccgttatcactttagtct 19114644  T
Q  221 ctta 224  Q
    ||||    
T  19114645 ctta 19114648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 52318418 - 52318347
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactt 202  Q
    ||||||| || ||||| |||||||||| |||||||||| |||||||||||| ||||| || |||||||||||    
T  52318418 gactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcactt 52318347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 36280402 - 36280334
Alignment:
Q  147 ttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||||| |  ||||||||| |||||||| ||| |||||||| ||||||||||| ||||||||||||    
T  36280402 ttcacataggtctctgactcaggattaaatataaataagtctctgactctgcacttccgttatcacttt 36280334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 2591666 - 2591733
Alignment:
Q  148 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||| | |||||||||| |||||||||||| |||||||| ||||||||||| | | ||||||||    
T  2591666 tcacataggtccctgactcaggattaaatacaaacaagtctctgactctgcacttccatgatcacttt 2591733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 3671089 - 3671144
Alignment:
Q  160 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||||||||||||||||| |||||| | ||||| ||||| ||||||||||||    
T  3671089 ctgactcagaattaaatacaaataagtctatgactctccacttccgttatcacttt 3671144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 20464088 - 20464175
Alignment:
Q  128 cccgactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||||| |||||| | ||||| || | |||| ||||  |||||||||||||||||| || |||||||||||  |||||||||||    
T  20464088 cccgactctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtccctgactctgcacttctgttatcacttt 20464175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 36278991 - 36279054
Alignment:
Q  148 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 211  Q
    |||||||| | ||||| |||| |||||||||||| |||||||| ||||||||||| ||||||||    
T  36278991 tcacataggtccctgattcaggattaaatacaaataagtctctgactctgcacttccgttatca 36279054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 17702010 - 17701936
Alignment:
Q  141 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||| ||| |||| | |||||||||  |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  17702010 ctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatcacttt 17701936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 47427890 - 47427959
Alignment:
Q  139 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgtta 208  Q
    |||||||| |||||||| | | ||||||| ||||||||||||||||||| || ||| ||||||| |||||    
T  47427890 acctcgctgtcacataggtccttgactcaaaattaaatacaaagaagtccctgactgtgcacttacgtta 47427959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 34263827 - 34263911
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| |||||||| ||||| || | | ||| |||| |||||||||||| |||||||| ||||| ||||| | ||||||||||    
T  34263827 gactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctgactctacacttccattatcacttt 34263911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 49261618 - 49261547
Alignment:
Q  148 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    |||||||| | |||||||||| |||||||||||||   ||||| |||||||| || |||||||||||| ||||||    
T  49261618 tcacataggtccctgactcaggattaaatacaaag---tctctaactctgcatttccgttatcactttagtctct 49261547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 55389569 - 55389486
Alignment:
Q  132 actctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||| |||||||| |||||||| |   ||||||| ||||||||||||  ||||| || ||||| ||||| ||||||||||||    
T  55389569 actctgcacctcgctgtcacataggtcattgactcaaaattaaatacaattaagtccctgactctacacttccgttatcacttt 55389486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 2592098 - 2592024
Alignment:
Q  141 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||| |||||||| | |||||||||| |||||||||||| ||||| || ||||   |||| ||||||||||||    
T  2592098 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactcaatacttccgttatcacttt 2592024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 30748006 - 30748105
Alignment:
Q  117 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||| ||||||||| || |||| |||||||| |||||||| | ||||||| || |||||||||||| |||||||| ||||| ||||||||||||||||||    
T  30748006 gtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacactttcgttatcacttt 30748105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 31218977 - 31219061
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| |||||||| |||||||| | | | |||||| |||||||||||||||||  || ||||||||||| ||||||||||||    
T  31218977 gactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagttcctgactctgcacttccgttatcacttt 31219061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 31219279 - 31219170
Alignment:
Q  114 atggtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 212  Q
    ||||||| |||| |||| ||||||| |||||||| |||||||| |   | |||||| |||||||||||||||||  || ||||  ||||| |||||||||    
T  31219279 atggtcactttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagttcctgactcgacacttccgttatcac 31219180  T
Q  213 tttcgtctct 222  Q
    ||| ||||||    
T  31219179 tttagtctct 31219170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 31091628 - 31091537
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    ||||||| |||| ||| |||||||| | |||||||||| |||||||||||| ||||| || ||||||||||| |||||||||||| ||||||    
T  31091628 gactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttagtctct 31091537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 5915093 - 5915012
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 212  Q
    ||||||| |||||||||||| |||| |   ||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  5915093 gactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtcactaactctgcacttccgttatcac 5915012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 17466929 - 17466840
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtct 220  Q
    ||||||| |||||||| |||||||     ||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  17466929 gactctgcacctcgctgtcacataagccgctgactcaggattaaatacaaagaagtctctgactctgcacttccgttatcactttagtct 17466840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 24458092 - 24458173
Alignment:
Q  141 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    |||||| |||||||| | ||||||||| ||||||||||||| |||| ||| ||||| |||||||||||||||||| ||||||    
T  24458092 ctcgctatcacataggtccctgactcaaaattaaatacaaataagtttctgactctacactttcgttatcactttagtctct 24458173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 32766340 - 32766256
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| |||||| | |||||||| | |||||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  32766340 gactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcacttt 32766256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 40000435 - 40000351
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| |||||||| | |||||||| ||||| | || |||||||||||| |||||||| || |||||||| ||||||||||||    
T  40000435 gactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctctaaccctgcacttccgttatcacttt 40000351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 15442072 - 15441981
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    |||||||| ||||||| ||||| ||||||||||||||| ||||||||||||| ||||  | | | ||||||||  |||||||||| ||||||    
T  15442072 gactctgttcctcgctgtcacaaagattcctgactcaggattaaatacaaagtagtccttgaatgtgcacttttattatcactttagtctct 15441981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 17330314 - 17330247
Alignment:
Q  148 tcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||| | |||||||||| |||||||||||| |||||||| |||||||| || ||||||||||||    
T  17330314 tcacataggtccctgactcaggattaaatacaaataagtctctgactctgcatttccgttatcacttt 17330247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 2910132 - 2910206
Alignment:
Q  141 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||| |||||||||| |||||||| | |||||||||||| |||||||| ||||||||||| | || |||||||    
T  2910132 ctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctgactctgcacttcctttgtcacttt 2910206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 14704056 - 14704112
Alignment:
Q  159 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  14704056 cctgactcaggattaaatacaaataagtccctcactctgcacttccgttatcacttt 14704112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 38985082 - 38985006
Alignment:
Q  139 acctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||| || ||||| |||||  |||||| ||||||||||||||||||||  | ||||||||||| ||||||||||||    
T  38985082 acctcactgtcacaaagatttatgactcggaattaaatacaaagaagtccttgactctgcacttccgttatcacttt 38985006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 39015027 - 39015107
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatca 211  Q
    ||||||| ||||||||  ||||||||| | |||||||| |||||||||||| | |||| | ||||||||||||| ||||||    
T  39015027 gactctgcacctcgctgccacatagatccttgactcaggattaaatacaaatacgtctttgactctgcactttcattatca 39015107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 31814416 - 31814361
Alignment:
Q  160 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||||||||||||| |||||||| | | ||||||||||| ||||||||||||    
T  31814416 ctgactcagaattaaatataaagaagtttttgactctgcacttccgttatcacttt 31814361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 32764989 - 32765044
Alignment:
Q  160 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  32764989 ctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcacttt 32765044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 31090171 - 31090264
Alignment:
Q  117 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttat 209  Q
    |||| ||||||||| || |||| | |||||| |||||||| | | |||||||| |||||||| ||| |||||||| ||||||||||| ||||||    
T  31090171 gtcaatttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctgactctgcacttccgttat 31090264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 24459547 - 24459463
Alignment:
Q  131 gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    ||||||| | |||||| |||||||| | ||||| |||| |||||||||||| |||||||| || ||||||||   ||||||||||    
T  24459547 gactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctgaccctgcacttctattatcacttt 24459463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 17466084 - 17466147
Alignment:
Q  152 atagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||| ||| |||||||| ||||||||||||||  ||||| ||||||||||| |||| |||||||    
T  17466084 ataggttcttgactcaggattaaatacaaagatatctctgactctgcacttccgttttcacttt 17466147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 5914309 - 5914410
Alignment:
Q  114 atggtcattttagtcccgactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcact 213  Q
    |||||||||||||| | |||| || |||||| | | | |||| |  |||||||| |||||||||||||||||||  | ||| ||||||  ||||||||||    
T  5914309 atggtcattttagttctgactttgcacctcgttgtgatataggtctctgactcacaattaaatacaaagaagtcagtgactttgcactcccgttatcact 5914408  T
Q  214 tt 215  Q
    ||    
T  5914409 tt 5914410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 7073700 - 7073745
Alignment:
Q  170 attaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||||||| |||||||| | ||||||||| ||||||||||||    
T  7073700 attaaatacaaataagtctctgattctgcacttccgttatcacttt 7073745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 21733833 - 21733788
Alignment:
Q  170 attaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||||||| |||||||| ||||||||||| ||| ||||||||    
T  21733833 attaaatacaaataagtctctgactctgcacttccgtcatcacttt 21733788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 39016451 - 39016393
Alignment:
Q  160 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    ||||||||| |||||||||||| |||||    ||||||||||| |||||||||||| ||||||    
T  39016451 ctgactcaggattaaatacaaataagtc----actctgcacttccgttatcactttagtctct 39016393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 34037742 - 34037690
Alignment:
Q  163 actcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||| |||||||||||| |||||| | |||||||||||  |||||||||||    
T  34037742 actcaggattaaatacaaataagtctatgactctgcacttctgttatcacttt 34037690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 5965515 - 5965452
Alignment:
Q  159 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    |||||||||| ||||||||||||||||||| | ||||||||||| |||||||||||| ||||||    
T  5965515 cctgactcaggattaaatacaaagaagtctttgactctgcacttccgttatcactttagtctct 5965452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 5736893 - 5736948
Alignment:
Q  160 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  5736893 ctgattcagaattaaatacaaagaaatctctaactctacactttcgttatcacttt 5736948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 32898561 - 32898462
Alignment:
Q  117 gtcattttagtccc-gactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||| ||||||||| ||||||| | ||| || |||||||| | ||||||| || |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  32898561 gtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccgttatcacttt 32898462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 35177427 - 35177501
Alignment:
Q  141 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||| |||||||| | |||||||| | |||||||||||| ||||| || ||||||||||| ||||||||||||    
T  35177427 ctcgctgtcacataggtccctgactccggattaaatacaaataagtccctgactctgcacttccgttatcacttt 35177501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 45476218 - 45476275
Alignment:
Q  165 tcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    ||||||||||||||||| |||||||| |||||||||||  ||||||||||| ||||||    
T  45476218 tcagaattaaatacaaataagtctctgactctgcacttctgttatcactttagtctct 45476275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 41754910 - 41754812
Alignment:
Q  117 gtcattttagtcccgactctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||| |||| ||| || |||| |||||||| ||||||||||  ||||||||| |||||||||||| ||||  || ||||| ||||| |||||| |||||    
T  41754910 gtcactttaatcctgattctgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagttcctgactctacacttccgttattacttt 41754812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 35178877 - 35178821
Alignment:
Q  159 cctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||||||| |||||||||||| ||||| || | ||||||||| ||||||||||||    
T  35178877 cctgactcaggattaaatacaaataagtccctgattctgcacttccgttatcacttt 35178821  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 28619050 - 28619101
Alignment:
Q  170 attaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctc 221  Q
    ||||||||||||||| ||  | |||||||||||||||||||||||| |||||    
T  28619050 attaaatacaaagaaatcattgactctgcactttcgttatcactttagtctc 28619101  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 1951991 - 1952045
Alignment:
Q  158 tcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcac 212  Q
    ||||||||||| |||||||||||| |||| ||| |||||||| |||| |||||||    
T  1951991 tcctgactcaggattaaatacaaataagtttctgactctgcattttcattatcac 1952045  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 41754023 - 41754097
Alignment:
Q  134 tctgtacctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgtta 208  Q
    |||| |||| ||| |||||||| | |||||||||| |||||||| ||| ||||| || ||||| |||||||||||    
T  41754023 tctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtccctgactctacactttcgtta 41754097  T

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Target: scaffold0767 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 5650 - 5712
Alignment:
Q  160 ctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcactttcgtctct 222  Q
    |||||||||||||||||||||||||||| || ||||| ||||| |||||||||||| ||||||    
T  5650 ctgactcagaattaaatacaaagaagtccctgactctacacttccgttatcactttagtctct 5712  T

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Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 116087 - 116161
Alignment:
Q  141 ctcgctttcacatagattcctgactcagaattaaatacaaagaagtctcttactctgcactttcgttatcacttt 215  Q
    |||||| |||||||| | |||||||||| |||||||||||| ||||| || ||| ||||||| ||||||||||||    
T  116087 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactatgcacttccgttatcacttt 116161  T

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