View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7003_high_25 (Length: 246)
Name: NF7003_high_25
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_high_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 37876919 - 37876713
Alignment:
| Q |
19 |
aatatgggtggctttaagggtcttaggaatagtttgaagttgctagcat--tattcttttagcaatctgaatgccgtggttcttaatttcgtgaatgggg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37876919 |
aatatgggtggctttaagggtcttaggaatagtttgaagttgctagcatattattcttttagcaatctgaatgccatggttcttaatttcgtgaatgggg |
37876820 |
T |
|
| Q |
117 |
taaggtttccgaacgaacgaataaggaatgacctgtttacatttttatatgaacaggtaaagattagcagaatctagaggttttctgtgtcgcatgaatg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
37876819 |
taaggtttccgaacgaacgaataaggaacgacctgtttacatttttatatgaacaggtaaagattagcagaatctagaggttttctgtgtcacaagaatg |
37876720 |
T |
|
| Q |
217 |
attgttt |
223 |
Q |
| |
|
||||||| |
|
|
| T |
37876719 |
attgttt |
37876713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 23894762 - 23894968
Alignment:
| Q |
19 |
aatatgggtggctttaagggtcttaggaatagtttgaagttgctagcat--tattcttttagcaatctgaatgccgtggttcttaatttcgtgaatgggg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23894762 |
aatatgggtggctttaagggtcttaggaatagtttgaagttgctagcatattattcttttagcaatctgaatgccatggttcttaatttcgtgaatgggg |
23894861 |
T |
|
| Q |
117 |
taaggtttccgaacgaacgaataaggaatgacctgtttacatttttatatgaacaggtaaagattagcagaatctagaggttttctgtgtcgcatgaatg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
23894862 |
taaggtttccgaacgaacgaataaggaacgacctgtttacatttttatatgaacaggtaaagattagcagaatctagaggttttctgtgtcacaagaatg |
23894961 |
T |
|
| Q |
217 |
attgttt |
223 |
Q |
| |
|
||||||| |
|
|
| T |
23894962 |
attgttt |
23894968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University