View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7003_high_5 (Length: 529)

Name: NF7003_high_5
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7003_high_5
NF7003_high_5
[»] chr3 (9 HSPs)
chr3 (243-517)||(5851963-5852237)
chr3 (13-183)||(5852302-5852478)
chr3 (100-150)||(41971307-41971357)
chr3 (104-150)||(46367424-46367470)
chr3 (93-145)||(55244466-55244518)
chr3 (97-147)||(32385929-32385979)
chr3 (97-150)||(388299-388352)
chr3 (106-150)||(2340754-2340798)
chr3 (93-141)||(31337606-31337654)
[»] chr2 (5 HSPs)
chr2 (93-151)||(8197577-8197635)
chr2 (93-151)||(8202337-8202395)
chr2 (94-151)||(19224970-19225027)
chr2 (89-145)||(7633471-7633527)
chr2 (94-150)||(19235021-19235077)
[»] chr1 (12 HSPs)
chr1 (92-151)||(38869069-38869128)
chr1 (94-145)||(7124330-7124381)
chr1 (93-145)||(48861417-48861471)
chr1 (93-150)||(17233808-17233865)
chr1 (93-137)||(13827630-13827674)
chr1 (97-145)||(17815671-17815719)
chr1 (93-141)||(50636269-50636317)
chr1 (94-141)||(7786977-7787024)
chr1 (93-151)||(6025793-6025851)
chr1 (93-151)||(15707007-15707065)
chr1 (93-150)||(109030-109087)
chr1 (105-145)||(16943355-16943395)
[»] chr5 (5 HSPs)
chr5 (93-151)||(18350938-18350996)
chr5 (93-145)||(41808110-41808162)
chr5 (97-145)||(27998633-27998681)
chr5 (111-151)||(28186818-28186858)
chr5 (104-148)||(15402285-15402329)
[»] chr4 (16 HSPs)
chr4 (93-151)||(29209211-29209269)
chr4 (93-145)||(32339747-32339799)
chr4 (93-140)||(21214633-21214680)
chr4 (93-151)||(40018225-40018283)
chr4 (94-139)||(24496768-24496813)
chr4 (93-150)||(47372839-47372896)
chr4 (93-145)||(31339712-31339764)
chr4 (95-145)||(29801569-29801619)
chr4 (93-151)||(37042700-37042758)
chr4 (93-151)||(40932960-40933018)
chr4 (93-151)||(41192249-41192307)
chr4 (97-151)||(44719397-44719451)
chr4 (93-150)||(54470395-54470452)
chr4 (111-151)||(20999206-20999246)
chr4 (93-141)||(22420763-22420811)
chr4 (93-145)||(31403076-31403128)
[»] chr8 (7 HSPs)
chr8 (93-145)||(23023413-23023465)
chr8 (92-145)||(25117472-25117525)
chr8 (93-145)||(30748651-30748703)
chr8 (93-145)||(37826475-37826527)
chr8 (97-144)||(11733939-11733986)
chr8 (93-151)||(12611685-12611743)
chr8 (93-151)||(23492222-23492280)
[»] chr6 (7 HSPs)
chr6 (93-145)||(1747987-1748039)
chr6 (97-151)||(586042-586096)
chr6 (93-143)||(4245916-4245966)
chr6 (95-145)||(7267427-7267477)
chr6 (97-151)||(32945440-32945494)
chr6 (97-130)||(7384079-7384112)
chr6 (93-145)||(5081028-5081080)
[»] chr7 (6 HSPs)
chr7 (97-145)||(6807396-6807444)
chr7 (103-143)||(36245300-36245340)
chr7 (93-145)||(40008473-40008525)
chr7 (97-145)||(40138990-40139038)
chr7 (97-151)||(22174192-22174246)
chr7 (94-151)||(46990082-46990139)
[»] scaffold0024 (1 HSPs)
scaffold0024 (93-151)||(82906-82964)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 243 - 517
Target Start/End: Complemental strand, 5852237 - 5851963
Alignment:
Q  243 tcagaaatggaaatagaaatatacatgcatatttttgtttggttaccttagtgggtagcccccatggccccacgaacatgtccattaccttagtggtgct 342  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5852237 tcagaaatggaaaaagaaatatacatgcatatttttgtttggttaccttagtgggtagcccccatggccccacgaacatgtccattaccttagtggtgct 5852138  T
Q  343 gctaattgtcaatttatccgttcacatcttgtcaacaaaccaaagctttaagctgagtagactagattatataccacaaaactgttttgatttttcatca 442  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5852137 gctaattgtcaatttatccgttcacatcttgctaacaaaccaaagctttaagctgagtagactagattatataccacaaaactgttttgatttttcatca 5852038  T
Q  443 attatcacacaagaagacttggactaagttgtgcaaatattttgtttatcagtataatttgttggaagaatttct 517  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5852037 attatcacacaagaagacttggactaagttgtgccaatattttgtttatcagtataatttgttggaagaatttct 5851963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 5852478 - 5852302
Alignment:
Q  13 aatatgagacgaagggagtaaaaaactaaaatctggaggttaataagttggatagaaatattactnnnnnnntaacattggttggatagaaatatgatat 112  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||    
T  5852478 aatatgagacgaagggagtaaaaaacaaaaatctggaggttaataagttggatagaaatattactaaaaaaataacattgtttggatagaaatatgatat 5852379  T
Q  113 atgatagagcattatgacgtcgtttgatccatgcagc------cgcttaatggaatagaacagttggttgttgttgt 183  Q
    ||||||||| |||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||    
T  5852378 atgatagagtattatgacgtcgtttgatccatgcagccgacctcgcttaatggaatagaacagttggttgttgttgt 5852302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 41971357 - 41971307
Alignment:
Q  100 agaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagcc 150  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  41971357 agaaatatgatatatgatagaacattatgacgttgtttgatccatgtagcc 41971307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 46367470 - 46367424
Alignment:
Q  104 atatgatatatgatagagcattatgacgtcgtttgatccatgcagcc 150  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  46367470 atatgatatatgatagaacattatgacgtcgtttgatccatgtagcc 46367424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 55244466 - 55244518
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    |||||||||||||||| ||||||||||| |||||||  |||||||||||||||    
T  55244466 gttggatagaaatatggtatatgatagaacattatggtgtcgtttgatccatg 55244518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 32385979 - 32385929
Alignment:
Q  97 gatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgca 147  Q
    |||| |||||||||||| |||||||||||||||| || ||||||| |||||    
T  32385979 gataaaaatatgatataagatagagcattatgacatcatttgatctatgca 32385929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 388352 - 388299
Alignment:
Q  97 gatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagcc 150  Q
    |||||||||| | |||||||||||||||||||||||  ||||||| ||| ||||    
T  388352 gatagaaatacggtatatgatagagcattatgacgtaatttgatcaatgtagcc 388299  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 2340798 - 2340754
Alignment:
Q  106 atgatatatgatagagcattatgacgtcgtttgatccatgcagcc 150  Q
    ||||||||||||||| ||||||| ||| |||||||||||| ||||    
T  2340798 atgatatatgatagaacattatggcgttgtttgatccatgaagcc 2340754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 31337654 - 31337606
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatc 141  Q
    |||||||||||||||| ||| ||||||| ||||||||| | ||||||||    
T  31337654 gttggatagaaatatggtatttgatagaacattatgacattgtttgatc 31337606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 8197635 - 8197577
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||||||||| |||||    
T  8197635 gttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagccg 8197577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 8202395 - 8202337
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||||||||| |||||    
T  8202395 gttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagccg 8202337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 19224970 - 19225027
Alignment:
Q  94 ttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    ||||||| | ||| ||||||||||||| || ||||| ||||||||||||||| |||||    
T  19224970 ttggatacatatacgatatatgatagaacactatgatgtcgtttgatccatgtagccg 19225027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 7633527 - 7633471
Alignment:
Q  89 attggttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    |||| ||||||| | |||||||||||||||  ||| ||| |||||||||||||||||    
T  7633527 attgtttggataaacatatgatatatgataatgcaatataacgtcgtttgatccatg 7633471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 19235077 - 19235021
Alignment:
Q  94 ttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagcc 150  Q
    ||||||||||||||| ||| ||||||| |||| || |||||||| ||||||| ||||    
T  19235077 ttggatagaaatatggtatttgatagaacattctgtcgtcgtttaatccatgtagcc 19235021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 38869069 - 38869128
Alignment:
Q  92 ggttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    ||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||| |||||    
T  38869069 ggttggatagatatatggtatatgatagaacattatggcgtcgtttgatccatgtagccg 38869128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 7124330 - 7124381
Alignment:
Q  94 ttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    ||||||||||||||| |||| ||||||||||||||  |||||||||||||||    
T  7124330 ttggatagaaatatggtataggatagagcattatggtgtcgtttgatccatg 7124381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 48861471 - 48861417
Alignment:
Q  93 gttggatagaaatatgatatat--gatagagcattatgacgtcgtttgatccatg 145  Q
    |||||||||||||||| |||||  |||||||||||||||||||||||||| ||||    
T  48861471 gttggatagaaatatggtatatttgatagagcattatgacgtcgtttgattcatg 48861417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 17233865 - 17233808
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagcc 150  Q
    ||||||||| |||||| ||||||||||||||||||| |  ||||||||||||| ||||    
T  17233865 gttggataggaatatggtatatgatagagcattatgtcagcgtttgatccatgtagcc 17233808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 13827674 - 13827630
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgttt 137  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||    
T  13827674 gttggatagaaatatggtatatgatagaacattatgacgttgttt 13827630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 17815671 - 17815719
Alignment:
Q  97 gatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    |||||||||||| |||||||||||||||| ||  |||||||||||||||    
T  17815671 gatagaaatatggtatatgatagagcattttggtgtcgtttgatccatg 17815719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 50636269 - 50636317
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatc 141  Q
    |||||||| ||||||| ||||||||||||||||||||| || |||||||    
T  50636269 gttggataaaaatatggtatatgatagagcattatgacatcatttgatc 50636317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 7787024 - 7786977
Alignment:
Q  94 ttggatagaaatatgatatatgatagagcattatgacgtcgtttgatc 141  Q
    ||||||||||||||||||||| ||| | ||||| ||||||||||||||    
T  7787024 ttggatagaaatatgatatataataaaacattaagacgtcgtttgatc 7786977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 6025793 - 6025851
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||||||||||| ||| ||||||| ||| ||| |||| ||||||||||| |||||    
T  6025793 gttggatagaaatatggtatctgatagaacatgatggcgtcatttgatccatgtagccg 6025851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 15707065 - 15707007
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||||||||||| | | |||| || |||||||||| ||||||||||| |||||||    
T  15707065 gttggatagaaatatggtgtttgattgaacattatgacgccgtttgatccacgcagccg 15707007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 109087 - 109030
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagcc 150  Q
    |||||||| | ||||||| ||||||||| ||||||| |||| ||||||||||| ||||    
T  109087 gttggataaatatatgatgtatgatagaacattatggcgtcatttgatccatgtagcc 109030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 16943355 - 16943395
Alignment:
Q  105 tatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    |||||||||||||||| ||||||| || |||||||||||||    
T  16943355 tatgatatatgatagaacattatggcggcgtttgatccatg 16943395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 18350996 - 18350938
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||||||||||| ||| || |||| |||||||||||||||||||||||| |||||    
T  18350996 gttggatagaaatatggtatttgttagaacattatgacgtcgtttgatccatgtagccg 18350938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 41808110 - 41808162
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    |||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||    
T  41808110 gttggatataaatatgatgtatgatagaacattatgacatcgtttgatccatg 41808162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 27998633 - 27998681
Alignment:
Q  97 gatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    ||||| || |||||||||||||||  |||||||||||||||||||||||    
T  27998633 gataggaacatgatatatgatagaatattatgacgtcgtttgatccatg 27998681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 28186858 - 28186818
Alignment:
Q  111 atatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  28186858 atatgatagaacattatggcgtcgtttgatccatgcagccg 28186818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 15402285 - 15402329
Alignment:
Q  104 atatgatatatgatagagcattatgacgtcgtttgatccatgcag 148  Q
    |||||||| ||||| ||  ||||||||||||||||||||||||||    
T  15402285 atatgataaatgatggaatattatgacgtcgtttgatccatgcag 15402329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 29209269 - 29209211
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||| ||| |||||    
T  29209269 gttggatagaaatatggtatatgatagagcattatggcgttgtttgatcaatgtagccg 29209211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 32339747 - 32339799
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    |||||||||| |||||||||||||||||  |||||| ||||||||||||||||    
T  32339747 gttggatagagatatgatatatgatagaaaattatggcgtcgtttgatccatg 32339799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 21214680 - 21214633
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgat 140  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||||||    
T  21214680 gttggagagaaatatgatgtatgatagagcattatgacgttgtttgat 21214633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 40018283 - 40018225
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||||  ||||||||||||||||| ||||| | |||||||||||||||| |||||    
T  40018283 gttggatagggatatgatatatgatagaacattacggcgtcgtttgatccatgtagccg 40018225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 24496813 - 24496768
Alignment:
Q  94 ttggatagaaatatgatatatgatagagcattatgacgtcgtttga 139  Q
    ||||||| |||||||| ||||||||||||||||||| |||||||||    
T  24496813 ttggatacaaatatgagatatgatagagcattatgaggtcgtttga 24496768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 47372839 - 47372896
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagcc 150  Q
    |||||||||||||||| ||||| ||||| |||||||  ||||||||||||||| ||||    
T  47372839 gttggatagaaatatggtatattatagaacattatggagtcgtttgatccatgtagcc 47372896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 31339712 - 31339764
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    ||||||| |||||||| || |||||||| ||||||||||||||||| ||||||    
T  31339712 gttggatcgaaatatggtacatgatagaacattatgacgtcgtttggtccatg 31339764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 29801569 - 29801619
Alignment:
Q  95 tggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    ||||| ||||||||||||||||| ||  |||||| ||||||||||||||||    
T  29801569 tggattgaaatatgatatatgattgaaaattatggcgtcgtttgatccatg 29801619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 37042758 - 37042700
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||||||||| | ||| ||||||| |||||||  ||||||||||||||| |||||    
T  37042758 gttggatagaaatacggtatttgatagaacattatggtgtcgtttgatccatgtagccg 37042700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 40933018 - 40932960
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||||  ||||||||||||||||| ||||||| || |||||||| |||| |||||    
T  40933018 gttggatagggatatgatatatgatagaacattatggcggcgtttgatgcatgtagccg 40932960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 41192249 - 41192307
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||||||||||| |||||| |||| ||||||| | ||||| |||||||| |||||    
T  41192249 gttggatagaaatatggtatatggtagaacattatggcttcgttcgatccatgtagccg 41192307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 44719451 - 44719397
Alignment:
Q  97 gatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||||| | ||||| |||||||||||||  ||||||||||||||| |||||    
T  44719451 gatagaaatacggtatataatagagcattatggtgtcgtttgatccatgtagccg 44719397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 54470395 - 54470452
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagcc 150  Q
    |||||||||||||||| |||||||  |||||||||  |||| ||||||||||| ||||    
T  54470395 gttggatagaaatatggtatatgactgagcattattgcgtcatttgatccatgtagcc 54470452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 20999206 - 20999246
Alignment:
Q  111 atatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    ||||| |||||||||||||||||||||||||| || |||||    
T  20999206 atatggtagagcattatgacgtcgtttgatccttgtagccg 20999246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 22420811 - 22420763
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatc 141  Q
    |||||||||| ||||| || |||||||||||||||| ||| ||||||||    
T  22420811 gttggatagagatatggtaaatgatagagcattatggcgttgtttgatc 22420763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 31403128 - 31403076
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    ||||||||||||| || |||||||||||||||||||  || | ||||||||||    
T  31403128 gttggatagaaatgtggtatatgatagagcattatggtgttgcttgatccatg 31403076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 23023413 - 23023465
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    ||||||||| || |||||||||||||||  |||||||||||||||||||||||    
T  23023413 gttggataggaacatgatatatgatagaatattatgacgtcgtttgatccatg 23023465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 25117472 - 25117525
Alignment:
Q  92 ggttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    ||||||||||| | ||||||||||||||| ||||||||| | ||||||||||||    
T  25117472 ggttggatagagaaatgatatatgatagaacattatgacattgtttgatccatg 25117525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 30748651 - 30748703
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    |||||||||||||||||||||| || || |||||||| ||| |||||||||||    
T  30748651 gttggatagaaatatgatatataattgaacattatgatgtcatttgatccatg 30748703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 37826475 - 37826527
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    |||||||||||||||| |||||||||||| |||||| | || |||||||||||    
T  37826475 gttggatagaaatatggtatatgatagagtattatggcatcatttgatccatg 37826527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 11733939 - 11733986
Alignment:
Q  97 gatagaaatatgatatatgatagagcattatgacgtcgtttgatccat 144  Q
    |||||||||||| ||| ||||||||||||||| |||||||||| ||||    
T  11733939 gatagaaatatggtatgtgatagagcattatggcgtcgtttgaaccat 11733986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 12611685 - 12611743
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    ||||| ||||||||||||||||| |||| | |||||  ||||||||||||||| |||||    
T  12611685 gttgggtagaaatatgatatatgttagaactttatggtgtcgtttgatccatgtagccg 12611743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 23492222 - 23492280
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||||||||||||||||||||||| || ||||  ||| ||| ||||||| |||||    
T  23492222 gttggatagaaatatgatatatgatagaacactatggtgtcatttaatccatgtagccg 23492280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 1748039 - 1747987
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    |||||||||||||||  ||||||||||| ||||| ||||||||||||||||||    
T  1748039 gttggatagaaatatagtatatgatagaacattacgacgtcgtttgatccatg 1747987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 586042 - 586096
Alignment:
Q  97 gatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||||||  ||||||||||| |||||||||||| |||||| |||| |||||    
T  586042 gatagaaatattgtatatgatagaacattatgacgtcatttgattcatggagccg 586096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 4245966 - 4245916
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatcca 143  Q
    |||||||| ||||||| ||| ||||||| ||||||||| ||||||||||||    
T  4245966 gttggataaaaatatggtatttgatagaacattatgacatcgtttgatcca 4245916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 7267477 - 7267427
Alignment:
Q  95 tggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    |||||| ||||||||||||||||  | |||||||| |||||||||||||||    
T  7267477 tggataaaaatatgatatatgatgcaacattatgatgtcgtttgatccatg 7267427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 32945440 - 32945494
Alignment:
Q  97 gatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||||||  ||||||||||| |||||||  ||||||||||||||| |||||    
T  32945440 gatagaaatattttatatgatagaacattatggtgtcgtttgatccatgtagccg 32945494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 130
Target Start/End: Original strand, 7384079 - 7384112
Alignment:
Q  97 gatagaaatatgatatatgatagagcattatgac 130  Q
    |||||||||||||||| |||||||||||||||||    
T  7384079 gatagaaatatgatatttgatagagcattatgac 7384112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 5081028 - 5081080
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    |||||||| ||||||||| ||||||||| || ||| ||||| |||||||||||    
T  5081028 gttggatacaaatatgatttatgatagaacactataacgtcatttgatccatg 5081080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 6807396 - 6807444
Alignment:
Q  97 gatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    |||||||||||| | ||||||||| ||||||| ||||||||||||||||    
T  6807396 gatagaaatatggtgtatgatagaacattatggcgtcgtttgatccatg 6807444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 36245340 - 36245300
Alignment:
Q  103 aatatgatatatgatagagcattatgacgtcgtttgatcca 143  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  36245340 aatatggtatatgatagaacattatgacgtcgtttgatcca 36245300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 40008525 - 40008473
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    |||||||||| | ||||||||||||||| ||||||| ||| ||||||||||||    
T  40008525 gttggatagagacatgatatatgatagaacattatgtcgttgtttgatccatg 40008473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 40139038 - 40138990
Alignment:
Q  97 gatagaaatatgatatatgatagagcattatgacgtcgtttgatccatg 145  Q
    ||||||||||||| ||||||||||  ||||||||||| |||||||||||    
T  40139038 gatagaaatatgacatatgatagaatattatgacgtcatttgatccatg 40138990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 22174192 - 22174246
Alignment:
Q  97 gatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||||||| ||| ||||||| ||||||| ||| |||||||||||| |||||    
T  22174192 gatagaaatatggtatgtgatagaacattatggcgttgtttgatccatgtagccg 22174246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 46990082 - 46990139
Alignment:
Q  94 ttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    ||||||| | ||||||||| |||||||||||||||| ||| |||||| |||| |||||    
T  46990082 ttggataaatatatgatatctgatagagcattatgaagtcatttgatacatgtagccg 46990139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 82906 - 82964
Alignment:
Q  93 gttggatagaaatatgatatatgatagagcattatgacgtcgtttgatccatgcagccg 151  Q
    |||||||  ||||||||| ||||||||| || ||||||||| ||||||||||| |||||    
T  82906 gttggatccaaatatgatttatgatagaacactatgacgtcatttgatccatgtagccg 82964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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