View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7003_high_8 (Length: 440)
Name: NF7003_high_8
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_high_8 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Original strand, 3171810 - 3172243
Alignment:
| Q |
7 |
tgaaatgaaatttggatttcctgaaatgtttgacttggaagccgaccaaaaactagatgcttcagagaagtcagattttgcatccaattctttgggaatt |
106 |
Q |
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| T |
3171810 |
tgaaatgaaatttggatttcctgaaatgtttgacttggaagatgaccaaaaactagatgcttcagagaagtcagattttgcatccaattctttgggaatt |
3171909 |
T |
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| Q |
107 |
ttttcacatcgagatcaacatccacaagtttcaactcttttatcaacgaaagaggaaggacttcaatcgaagaatttgaatctaccatgtttaaagttgc |
206 |
Q |
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| T |
3171910 |
ttttcacatcgagatcaacatccacaagtttcaactcttttatcaatgaaagaggaaggacttcaatcgaagaatttgaatctaccatgtttaaagttgc |
3172009 |
T |
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| Q |
207 |
ttccagtgccttcacactactagaatgagttaaactcaatgttttgtcaagttttggaaatgtaggtatgtgaatcaacctcggacaaaaattgatttgt |
306 |
Q |
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| T |
3172010 |
ttccagtgccttcacactactagaatgagttaaactcaatgttttgtcaagttttggaaatgtaggtatgtgactcaacctcggacaaaaattgatttgt |
3172109 |
T |
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| Q |
307 |
aaatgagaaagacgggaagaaaacggagggaaggagagatgatttgatggtgaagaggaatcatcgtcattgacatcatccctcatcctcacccatcccc |
406 |
Q |
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| T |
3172110 |
aaatgagaaagacgggaagaaaacggagggaagaagagataatttgatggtgaagaggaatcatcatcattgacatcatccctcatcctcacccatcccc |
3172209 |
T |
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| Q |
407 |
tcaaccttttacatgaaataaatgtgaggttctc |
440 |
Q |
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| T |
3172210 |
tcaactttttacatgaaataaatgtgaggttctc |
3172243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 3004383 - 3004340
Alignment:
| Q |
70 |
agagaagtcagattttgcatccaattctttgggaattttttcac |
113 |
Q |
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| T |
3004383 |
agagaagtgagattttgcaaccaattctttgggagttttttcac |
3004340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 3140231 - 3140285
Alignment:
| Q |
61 |
agatgcttcagagaagtcagattttgcatccaattctttgggaattttttcacat |
115 |
Q |
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| T |
3140231 |
agatgcttgagagaagtcagaatttgcaaccaatcctctgggagttttttcacat |
3140285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 409
Target Start/End: Original strand, 3168539 - 3168637
Alignment:
| Q |
311 |
gagaaagacgggaagaaaacggagggaaggagagatgatttgatggtgaagaggaatcatcgtcattgacatcatccctcatcctcacccatcccctca |
409 |
Q |
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| T |
3168539 |
gagaaagatgagaagaaaagggagggaaggaaagatgatgaaattgtgaagagttttcaacattattgacatcatccctcaacctccaccatcccctca |
3168637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 7161570 - 7161476
Alignment:
| Q |
22 |
atttcctgaaatgtttgacttggaagccgaccaaaaactagatgcttcagagaagtcagattttgcatccaattctttgggaattttttcacatc |
116 |
Q |
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| T |
7161570 |
atttcctgaaatgttcgacttggaagcttcataaaaacaagatgctcgagggaagtcagattttgcacccaatccttcaggtatttttttacatc |
7161476 |
T |
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