View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7003_high_9 (Length: 431)
Name: NF7003_high_9
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 47122878 - 47123279
Alignment:
| Q |
16 |
cttctctcctagtaaacacaatagtatagttgnnnnnnnaaagataaaaggtcccaacataatgaaatgatagaaccatactcagataagtcagatttga |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47122878 |
cttctctcctagtaaacacaatattatagttgtttttttaaagataaaaggtcccaacataatgaaatgatagaaccatactcagataagtcagatttga |
47122977 |
T |
|
| Q |
116 |
tgttgtgaacatcgtctactacttgtttgcaatccatctctataatgtgacccaattcaaatgcaaaggaatcaaccaatctatagcttggttaagtcct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47122978 |
tgttgtgaacatcgtctactacttgtttgcaatccatctctataatgtgacccaattcaaatgcaaaggaatcaaccaatctatagcttggttaagtcct |
47123077 |
T |
|
| Q |
216 |
caagcctctccctctgctgcagacataacacatgtgcaccaaatattgtatgtctttttgaaatgtcattcgacatctctaagacaaacagtcataccca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| || |
|
|
| T |
47123078 |
caagcctctccctctgctgcagacataacacatgtgcaccaaatattgtatgtctttttgaaatgttattctacatctctaagacaaacagtcatactca |
47123177 |
T |
|
| Q |
316 |
ctttcttcatggttgagaagatggctacatcaagattacacattacatagtcataaaggaagcatccaacccgtgttttcaattcgacttgtctgttttc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47123178 |
ctttcttcatggttgagaagatggctacatcaagattacacattacatagtcataaaggatgcatccaacccgtgttttcaattcgacttgtctgttttc |
47123277 |
T |
|
| Q |
416 |
tg |
417 |
Q |
| |
|
|| |
|
|
| T |
47123278 |
tg |
47123279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University