View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7003_low_1 (Length: 1008)
Name: NF7003_low_1
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Original strand, 2485841 - 2486340
Alignment:
| Q |
18 |
catatctctctaaaattttcaacattcacgtattggatacatattcattcagtttttacgtttaattttttgaaagtaaattaaaaatggaacagaaagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2485841 |
catatctctctaaaattttcaacattcacgtattggatacatattcattcagtttttacggttaattttttgaaagtaaattaaaaatggaacagaaagg |
2485940 |
T |
|
| Q |
118 |
aatgttgatatcagccgcgcttagcgttggtgttggagttggccttggcttggcttctggacaaaccatgtttaaacctaatacttactcctcctcctcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2485941 |
aatgttgatatcagccgcgcttagcgttggtgttggagttggccttggcttggcttctggacaaaccatgtttaaacctaatacttactcctcctcctcc |
2486040 |
T |
|
| Q |
218 |
aacgccctcactcctgacaagattgaaaacgaaatgctacgactcattgttgatggtagagaaagcaatgtcacctttgataatttcccttattatctca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486041 |
aacgccctcactcctgacaagattgaaaacgaaatgctacgactcgttgttgatggtagagaaagcaatgtcacctttgataatttcccttattatctca |
2486140 |
T |
|
| Q |
318 |
ggtatattatcgattcattctccttttattttcctattttccatgatacatgcatgcgaatttgtttagtttccggttcatttgtagtaataaccatatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2486141 |
ggtatattatcgattcattctccttttattttcctattttccatcatacatgcatgcgaatttgtttagtttccggtacatttgtagtaataaccatatt |
2486240 |
T |
|
| Q |
418 |
aataaagatctcattctcattgactgttttcttaattacatggttgctgtatgacatacatttgtattcatattattattcgtataaaggaaaccatata |
517 |
Q |
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| T |
2486241 |
aataaagatctcattctcattgactgttttcttaattacatggttgctgtatgacatacatttgtattcatattattattcgtataaagcaaaccatata |
2486340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 578 - 997
Target Start/End: Original strand, 2486401 - 2486819
Alignment:
| Q |
578 |
aaatgtgtagacttgtaaagataaaatgtaagaaaaagatggagataaataaacacatatggtgtcgcctacagtgtctgtattttgatctagcaaataa |
677 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2486401 |
aaatgtgtagacttgtaaggataaaatgtaagaaaaagatggagataaataaacacat-tggtgtcgcctaccgtgtctgtattttgatctagcaaataa |
2486499 |
T |
|
| Q |
678 |
taatgacaactagcaaatcataatgtttaatctctaattgattttattaacacgattcaatattggttctgataagatctttctcattgtatttatcatg |
777 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486500 |
taatgacgactagcaaatcataatgtttgatctctaattgattttattaacacgattcaatattggttctgataagatctttctcattgtatttatcatg |
2486599 |
T |
|
| Q |
778 |
acagtgagcagacacgcgtgttgcttacaagtgctgcttatgtccatttaaagcatgcagaggtttctaaatatacacggaatcttgctcctgcaagccg |
877 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486600 |
acagtgagcagacacgcgtgttgcttacaagtgctgcttatgtccatttaaagcatgcagaggtttctaaatatacacggaatcttgctcctgcaagccg |
2486699 |
T |
|
| Q |
878 |
gactattctgctctcgggaccagccggttagtctgaatttggtagtttataatcagggattgataagcttttatgtttctactgattccttgaagctaat |
977 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486700 |
gactattctgctctcgggaccagccggttagtctgaatttggtagtttataatgagggattgataagcttttatgtttctactgattccttgaagctaat |
2486799 |
T |
|
| Q |
978 |
tcaaaacttcccctgttcat |
997 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2486800 |
tcaaaacttcccctgttcat |
2486819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 778 - 909
Target Start/End: Complemental strand, 41594955 - 41594824
Alignment:
| Q |
778 |
acagtgagcagacacgcgtgttgcttacaagtgctgcttatgtccatttaaagcatgcagaggtttctaaatatacacggaatcttgctcctgcaagccg |
877 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||| ||||| |||||||||||||| || |||||||||||||| || |||||||||||||| ||| | |
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| T |
41594955 |
acagtgagcagacgcgggttttgcttacaagtgctgcatatgttcatttaaagcatgctgaagtttctaaatatacgcgtaatcttgctcctgctagcag |
41594856 |
T |
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| Q |
878 |
gactattctgctctcgggaccagccggttagt |
909 |
Q |
| |
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|||||||| ||||| || || || ||||||| |
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| T |
41594855 |
aactattcttctctctggccctgctggttagt |
41594824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 41595088 - 41595036
Alignment:
| Q |
263 |
attgttgatggtagagaaagcaatgtcacctttgataatttcccttattatct |
315 |
Q |
| |
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||||||||||| ||||||||||| || || |||||||| |||||||||||||| |
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|
| T |
41595088 |
attgttgatggcagagaaagcaacgttacttttgataaattcccttattatct |
41595036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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