View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7003_low_10 (Length: 428)
Name: NF7003_low_10
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 9 - 410
Target Start/End: Complemental strand, 39624584 - 39624183
Alignment:
| Q |
9 |
agcagagatgagttgttgattgaattgagaaggaactttctcaaggcacaagaccaattgagagacaagcaaacaacaataggaaaggagtgagaccaag |
108 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39624584 |
agcaaagatgagttgttggttgaattgagaaggaactttctcaaggctcaagaccaattgagagacaagcaaacaacaagaggaaaggagtgagaccaag |
39624485 |
T |
|
| Q |
109 |
tattgagtatttccgaagccgcagctttacatctaaaaaccccgatgaaagttcccattgttatgggccttatcagagagggttggacaggttttataca |
208 |
Q |
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| T |
39624484 |
tattgagtatttccgaagccgcagctttacatctaaaaaccccgatgaaagttcccattgttatgggccttatcagagagggttggacaggttttataca |
39624385 |
T |
|
| Q |
209 |
ggttataaaattacctcatcacagcagaacgcactcagcttttcaactctccttgttgaagaaagccttgggtccagatcagaggggccaacctctgccg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39624384 |
ggttataaaattacctcatcacagcagaacgcactcagcttttcaactctccttgttgaagaaagccttgggtccagatcagaggggccaacctctgccg |
39624285 |
T |
|
| Q |
309 |
tctgcccccaatgctatcaaataaaacaggagttgaagacacaactcgtagaagtggttgacataaagaaaaattctgcaggtgaattcgaggtgttgat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39624284 |
tctgcccccaatgctatcaaataaaacaggagttgaagacacaactcgtagaagtggttgacataaagaaaaattctgcaggtgaattcgaggtgttgat |
39624185 |
T |
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| Q |
409 |
ca |
410 |
Q |
| |
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|| |
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| T |
39624184 |
ca |
39624183 |
T |
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