View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7003_low_12 (Length: 423)
Name: NF7003_low_12
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 106 - 407
Target Start/End: Original strand, 55382936 - 55383238
Alignment:
| Q |
106 |
ggtttcaaatttggttcttaaaagagtgtaacctataagaatttcaattaaagagattgttaaaaaagggtgttgttagcccttt-caaattaaaatcta |
204 |
Q |
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| T |
55382936 |
ggtttcaaatttggttcttaaaagagtgtaacctataaaaatttcacttaaagagattgttaaaaaagagtgttgttagcccttttcaaattaaaatcta |
55383035 |
T |
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| Q |
205 |
atcttctatcaatcaactaaacttttaatatcgtctctaaactttaagcttttaatatcttcactaaacttacaccacctcttttattttacatctattg |
304 |
Q |
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| T |
55383036 |
atcttctattaatcaactaaacttttaatatcgtctctaaactttaagcttttaatatcttcactaaacttacatcacctcttttattttacatctattg |
55383135 |
T |
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| Q |
305 |
tccactttagtcatgtatatctagggactaacgtgacaaatgtaagaaaatgttataaactaaatgtaaaatactaaagtctgtttataaaacattagta |
404 |
Q |
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| T |
55383136 |
tccactttagtcatgtatatccagggactaacgtgacaaatgtaagaaaatgttataaactaaatgtaaaatactaaagtctgtttataaaacattagta |
55383235 |
T |
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| Q |
405 |
act |
407 |
Q |
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||| |
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| T |
55383236 |
act |
55383238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 29179651 - 29179614
Alignment:
| Q |
53 |
ttgtaacattgtgattggtcagagtcaccaatgtcacc |
90 |
Q |
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| T |
29179651 |
ttgtgacattgtgattggtcagtgtcaccaatgtcacc |
29179614 |
T |
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