View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7003_low_17 (Length: 391)
Name: NF7003_low_17
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_low_17 |
 | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 30653267 - 30652911
Alignment:
| Q |
18 |
aagaacggcatgtattcggtgcacaatgcatatagactttgtgttagcagataattctcatttacatttattaggtagttgcattttatttggaaactta |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
30653267 |
aagaacgacatgtattcggtgcacaatgcatatagactttgtgttaacagataattcgcatttacatttagcaggtagttgcatttgatttggaaactta |
30653168 |
T |
|
| Q |
118 |
aagtcccccc-aagatcaacaatcttttatggcatgtttgtagatggtgctttcccactagatctcaatggcatgcattgtttcgttgattgtgtgcttt |
216 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30653167 |
aagtcccccccaagatcaataatcttgtatggcatgtttgtagagggtgctttcccactagatctcaatggcatgcattgtttcgttgattgtgtgcttt |
30653068 |
T |
|
| Q |
217 |
gtggaagtaattatgaagataatattcataatcttttatagtgtcatgtgatatgcatatttggcgagaggttaatttatgggacaagattgacaaggta |
316 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
30653067 |
gtggaagtaattatgaagataatattcgtagtcttttatagtgtcatgtgatatgcatatttggcgagaggttaatttatgggataagattgacagggta |
30652968 |
T |
|
| Q |
317 |
ttaaggcaaaactataacatggatgcggtgatttttagccttttgtctcaacttaat |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30652967 |
ttaaggcaaaactataacatggatgcggtgatttttagccttttgtctcaacttaat |
30652911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 39649558 - 39649518
Alignment:
| Q |
202 |
ttgattgtgtgctttgtggaagtaattatgaagataatatt |
242 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
39649558 |
ttgattgtgttctttgtggtagtaattatgaagatagtatt |
39649518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 186 - 373
Target Start/End: Original strand, 10214698 - 10214886
Alignment:
| Q |
186 |
ggcatgcattgtttcgttgattgtgtgctttgtggaagtaattatgaagataatattcataatcttttatagtgtcatg-tgatatgcatatttggcgag |
284 |
Q |
| |
|
|||||||||||| ||||||||||||| | ||| ||||||||| ||||||||||||||||| ||||||| ||||||||| || ||||||||||||| ||| |
|
|
| T |
10214698 |
ggcatgcattgtcccgttgattgtgtgttgtgtagaagtaattttgaagataatattcatattcttttagagtgtcatggtgctatgcatatttggagag |
10214797 |
T |
|
| Q |
285 |
aggttaatttatgggacaagattgacaaggtattaaggcaaaactataacatggatgcggtgatttttagccttttgtctcaacttaat |
373 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| ||||||||||| || |||||||||| |||| |
|
|
| T |
10214798 |
aggttaatttatgggataagattgacaaggcattaaggctaaactataacatggatgctgtgatttttagtctcttgtctcaacctaat |
10214886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 186 - 373
Target Start/End: Complemental strand, 14857812 - 14857624
Alignment:
| Q |
186 |
ggcatgcattgtttcgttgattgtgtgctttgtggaagtaattatgaagataatattcataatcttttatagtgtcatg-tgatatgcatatttggcgag |
284 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||| ||| ||| |||||| || |||| ||||| ||||||||| |
|
|
| T |
14857812 |
ggcatgcattgtcctgtcgattgtgtactttgtggaagtaattttgaagataatattcatattctcttagagtgtcctggtgatgtgcatctttggcgag |
14857713 |
T |
|
| Q |
285 |
aggttaatttatgggacaagattgacaaggtattaaggcaaaactataacatggatgcggtgatttttagccttttgtctcaacttaat |
373 |
Q |
| |
|
|||||||||||| ||| |||||||| | || ||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
14857712 |
aggttaatttataggataagattgagagggcattaaggaaaacttataacatggatgcaatgatttttagcctcttgtctcaacttaat |
14857624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 12715675 - 12715638
Alignment:
| Q |
201 |
gttgattgtgtgctttgtggaagtaattatgaagataa |
238 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
12715675 |
gttgattgtgttctttgtggtagtaattatgaagataa |
12715638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 12776906 - 12776869
Alignment:
| Q |
201 |
gttgattgtgtgctttgtggaagtaattatgaagataa |
238 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
12776906 |
gttgattgtgttctttgtggtagtaattatgaagataa |
12776869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 230 - 373
Target Start/End: Complemental strand, 24663006 - 24662864
Alignment:
| Q |
230 |
tgaagataatattcataatcttttatagtgtcatgtgatatgcatatttggcgagaggttaatttatgggacaagattgacaaggtattaaggcaaaact |
329 |
Q |
| |
|
|||||||| |||||||| |||||| | |||| ||| |||| ||||||||||||||||||||||||||||||||||||| | || ||| |||||||||| |
|
|
| T |
24663006 |
tgaagatagtattcatattcttttggattgtcc-gtgctatgaatatttggcgagaggttaatttatgggacaagattgatagggcattgaggcaaaact |
24662908 |
T |
|
| Q |
330 |
ataacatggatgcggtgatttttagccttttgtctcaacttaat |
373 |
Q |
| |
|
||||||||||| |||||||||| |||||||| | |||||||| |
|
|
| T |
24662907 |
ttaacatggatgtagtgatttttaaccttttgtattaacttaat |
24662864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 373
Target Start/End: Original strand, 27526981 - 27527029
Alignment:
| Q |
325 |
aaactataacatggatgc-ggtgatttttagccttttgtctcaacttaat |
373 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
27526981 |
aaactataacatggatgccggtgatttttagccttttgt-tcaacttaat |
27527029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 88591 - 88634
Alignment:
| Q |
202 |
ttgattgtgtgctttgtggaagtaattatgaagataatattcat |
245 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
88591 |
ttgattgtgttctttgtggtagtaattatgaagatagtattcat |
88634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University