View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7003_low_20 (Length: 280)
Name: NF7003_low_20
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_low_20 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 51 - 247
Target Start/End: Original strand, 20654035 - 20654233
Alignment:
| Q |
51 |
acgattacaatcatgaaacac---cacataaacaacattaacaaaaacaacatcaattttcattcatccttcttttttgtttacatattccattagttag |
147 |
Q |
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| T |
20654035 |
acgattacaatcatgaaacacaaccacataaacaacattaacaaaaacaacatcaattttcatttatcgttgttttttgtttacatattccattagttag |
20654134 |
T |
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| Q |
148 |
ttactactttctcaattcgctttccttttttgtttcaaccaccgacacaaaaatggtaaccaccgtaattctgttcaccgtcacggtggttctctcatcg |
247 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20654135 |
ttactactttctcaattcactttccttttttgtttcaaccaccgacac-accatggtaaccgccgtaattctgttcaccgtcacggtggttctctcatcg |
20654233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 18590 - 18687
Alignment:
| Q |
151 |
ctactttctcaattcgctttccttttttgtttcaaccaccgacacaaaaatggtaaccaccgtaattctgttcaccgtcacggtggttctctcatcggc |
249 |
Q |
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||||||||| ||||| |||||||||| |||| |||||||||||| | |||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
18590 |
ctactttctaaattcactttccttttctgttgttaccaccgacacacca-tggtaaccgccgtaattcagttcaccgtcacggtggttctctcatcggc |
18687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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