View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7003_low_23 (Length: 257)

Name: NF7003_low_23
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7003_low_23
NF7003_low_23
[»] chr4 (8 HSPs)
chr4 (12-238)||(7166801-7167027)
chr4 (51-180)||(46492481-46492611)
chr4 (51-181)||(46490894-46491024)
chr4 (51-181)||(46492933-46493064)
chr4 (72-181)||(7176956-7177066)
chr4 (72-166)||(46494575-46494669)
chr4 (51-86)||(46494350-46494385)
chr4 (194-235)||(41157166-41157207)
[»] chr7 (6 HSPs)
chr7 (98-177)||(12496323-12496402)
chr7 (98-177)||(12520188-12520267)
chr7 (98-177)||(12580477-12580556)
chr7 (103-177)||(12581035-12581109)
chr7 (98-177)||(12496852-12496931)
chr7 (98-177)||(12520717-12520796)
[»] chr3 (1 HSPs)
chr3 (191-238)||(48329334-48329381)
[»] chr5 (1 HSPs)
chr5 (191-236)||(18344723-18344768)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 7167027 - 7166801
Alignment:
Q  12 cctgtgccatttaaaaagatagattatcgtattaggagaagaaactcttgtgtttttctaatagaatagttaattaataatgaatgaaaaatattgatta 111  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7167027 cctgtgacatttaaaaagatagattatcgtattaggagaagaaactcttgtgtttttctaatagaatagttaattaataatgaatgaaaaatattgatta 7166928  T
Q  112 atacttacattgatgttgtctttaagcaacagactcaatgcttcgccatagacatcttcttgattgttatgaaggatattttaacagaggatcaaaatca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7166927 atacttacattgatgttgtctttaagcaacagactcaatgcttcgccatagacatcttcttgattgttatgaaggatattttaacagaggatcaaaatca 7166828  T
Q  212 taaatatgaaaatacagcatattatta 238  Q
    |||||||||||||||| ||||||||||    
T  7166827 taaatatgaaaatacaacatattatta 7166801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 46492481 - 46492611
Alignment:
Q  51 agaaactcttgtgtttttctaatagaatagttaattaataatgaatgaaaa-atattgattaatacttacattgatgttgtctttaagcaacagactcaa 149  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||| ||||||||    
T  46492481 agaaactcttgtatttttctaatagaataattaattaataatgaatgaaaaaatattgattaatacttactttgacgttgtctctaagcaagagactcaa 46492580  T
Q  150 tgcttcgccatagacatcttcttgattgtta 180  Q
    || || |||||| ||||||| ||||||||||    
T  46492581 tgttttgccataaacatctttttgattgtta 46492611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 46491024 - 46490894
Alignment:
Q  51 agaaactcttgtgtttttctaatagaatagttaattaataatgaatgaaaaatattgattaatacttacattgatgttgtctttaagcaacagactcaat 150  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| |||  ||      
T  46491024 agaaactcttgtatttttctaatagaatagttaattaataatgaatgaaaaatattgattaataattactttgatgttgtctctaagcaagagatgcatg 46490925  T
Q  151 gcttcgccatagacatcttcttgattgttat 181  Q
    |||| | ||||| |||||| |||||||||||    
T  46490924 gctttgtcataggcatctttttgattgttat 46490894  T

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Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 46493064 - 46492933
Alignment:
Q  51 agaaactcttgtgtttttctaatagaatagttaattaataatgaatga-aaaatattgattaatacttacattgatgttgtctttaagcaacagactcaa 149  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| |||||       
T  46493064 agaaactcttgtatttttctaatagaatagttaattaataatgaatgaaaaaatattgattaatacttactttgatgttgtctctaagcaagagacttgt 46492965  T
Q  150 tgcttcgccatagacatcttcttgattgttat 181  Q
     |||| |||||| ||| ||| |||||||||||    
T  46492964 ggctttgccatatacaactttttgattgttat 46492933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 7177066 - 7176956
Alignment:
Q  72 atagaatagttaattaataatgaatgaaaaat-attgattaatacttacattgatgttgtctttaagcaacagactcaatgcttcgccatagacatcttc 170  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||  ||||||| ||||| |||||| ||    
T  7177066 atagaatagttaattaacaatgaatgaaaaattattgattaatacttactttgattttgtctttaagtaacagacctaatgctttgccatggacatcatc 7176967  T
Q  171 ttgattgttat 181  Q
    ||| |||||||    
T  7176966 ttgtttgttat 7176956  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 46494575 - 46494669
Alignment:
Q  72 atagaatagttaattaataatgaatgaaaaatattgattaatacttacattgatgttgtctttaagcaacagactcaatgcttcgccatagacat 166  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | | ||| |||| || ||||| | |||||||||    
T  46494575 atagaatagttaattaataatgaataaaaaatattgattaatacttactttgatgttgtctctgaacaagagacccagtgctttgtcatagacat 46494669  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 46494350 - 46494385
Alignment:
Q  51 agaaactcttgtgtttttctaatagaatagttaatt 86  Q
    |||||||||||| |||||||||||||||||||||||    
T  46494350 agaaactcttgtatttttctaatagaatagttaatt 46494385  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 41157166 - 41157207
Alignment:
Q  194 aacagaggatcaaaatcataaatatgaaaatacagcatatta 235  Q
    ||||||||| |||||||||| ||||||||||| |||||||||    
T  41157166 aacagaggaccaaaatcatagatatgaaaatatagcatatta 41157207  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 12496323 - 12496402
Alignment:
Q  98 aaaaatattgattaatacttacattgatgttgtctttaagcaacagactcaatgcttcgccatagacatcttcttgattg 177  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||| || | ||| ||||| ||||||||||||||||    
T  12496323 aaaattattgattaatactaacgttgatgttgtctttaagcaacagacccagtcctttgccatggacatcttcttgattg 12496402  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 12520188 - 12520267
Alignment:
Q  98 aaaaatattgattaatacttacattgatgttgtctttaagcaacagactcaatgcttcgccatagacatcttcttgattg 177  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||| || | ||| ||||| ||||||||||||||||    
T  12520188 aaaattattgattaatactaacgttgatgttgtctttaagcaacagacccagtcctttgccatggacatcttcttgattg 12520267  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 12580477 - 12580556
Alignment:
Q  98 aaaaatattgattaatacttacattgatgttgtctttaagcaacagactcaatgcttcgccatagacatcttcttgattg 177  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||| || | ||| ||||| ||||||||||||||||    
T  12580477 aaaattattgattaatactaacgttgatgttgtctttaagcaacagacccagtcctttgccatggacatcttcttgattg 12580556  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 12581109 - 12581035
Alignment:
Q  103 tattgattaatacttacattgatgttgtctttaagcaacagactcaatgcttcgccatagacatcttcttgattg 177  Q
    |||||||| ||||| ||||||||||||||| ||| |||||||| |||| ||| ||||| ||||||||||||||||    
T  12581109 tattgattgatactaacattgatgttgtctctaaccaacagacccaattctttgccatggacatcttcttgattg 12581035  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 12496931 - 12496852
Alignment:
Q  98 aaaaatattgattaatacttacattgatgttgtctttaagcaacagactcaatgcttcgccatagacatcttcttgattg 177  Q
    |||| |||||||| ||||| ||||||||||||||| ||| |||||||| |||| ||| | ||| ||||||||||||||||    
T  12496931 aaaattattgattgatactaacattgatgttgtctctaaccaacagacccaattctttgtcatggacatcttcttgattg 12496852  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 12520796 - 12520717
Alignment:
Q  98 aaaaatattgattaatacttacattgatgttgtctttaagcaacagactcaatgcttcgccatagacatcttcttgattg 177  Q
    |||| |||||||| ||||| ||||||||||||||| ||| |||||||| |||| ||| | ||| ||||||||||||||||    
T  12520796 aaaattattgattgatactaacattgatgttgtctctaaccaacagacccaattctttgacatggacatcttcttgattg 12520717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 48329334 - 48329381
Alignment:
Q  191 tttaacagaggatcaaaatcataaatatgaaaatacagcatattatta 238  Q
    ||||||||||||||||||||||| |||||||  || ||||||||||||    
T  48329334 tttaacagaggatcaaaatcatagatatgaatgtatagcatattatta 48329381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 18344723 - 18344768
Alignment:
Q  191 tttaacagaggatcaaaatcataaatatgaaaatacagcatattat 236  Q
    ||||||| |||| |||||||||| ||||||||||| ||||||||||    
T  18344723 tttaacataggaccaaaatcatagatatgaaaatatagcatattat 18344768  T

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