View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7003_low_25 (Length: 253)
Name: NF7003_low_25
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 7167137 - 7167382
Alignment:
| Q |
1 |
ttcatagcacatcagttttttgttgtaaggaaaagttgaagcatatagacaaaagttgtaggctaaagaatgttattattattgttttatattttcattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7167137 |
ttcatagcacatcagttttttgttgtaaggaaaagttgaagcatatagacaaaagttgtaggctaaagaatgttattattattgttttatattttcattg |
7167236 |
T |
|
| Q |
101 |
taaattatttgaaacgcataaaagaaaacaatttcattttgttttgtcactaaaatcaattgttagttgaaattttgaatataaattatgcatgtattgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7167237 |
taaattatttgaaacgcataaaagaaaacaatttcattttgttttgtcactaaaatcaattgttagttgaaattttgaatataaattatgcatgtattgg |
7167336 |
T |
|
| Q |
201 |
gtgctagggtttacaagcatgttcggtgcagtcctcattcatctca |
246 |
Q |
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| T |
7167337 |
gtgctagggtttacaagcatgttcggtgcagtcctcattcatctca |
7167382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 46493204 - 46493445
Alignment:
| Q |
1 |
ttcatagcacatcagttttttgttgtaaggaa-aagttgaagcatatagacaaaagttgtaggctaaagaatgttattattattgttttatattttcatt |
99 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| || || || |||||||| |
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| T |
46493204 |
ttcatagcacattagttttttgttgtaaggaagaagttgaagcatatagacaaacgttggaggctaaagaatgttatttttctt-----atgttttcatt |
46493298 |
T |
|
| Q |
100 |
gtaaattatttgaaacgcataaaagaaaacaatttcattttgttttgtcactaaaatcaattgttagttgaaattttg-----------aatataaatta |
188 |
Q |
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| T |
46493299 |
gtaaattatttgaaacacataaaagaaatccatttcattt--ttttgtcactaaaatcaattgttagttgaaatttcgaatattttcaaaatataaatta |
46493396 |
T |
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| Q |
189 |
tgcatgtattgggtgctagggtttacaagcatgttcggtgcagtcctca |
237 |
Q |
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| T |
46493397 |
tgcatgtattgggtgttagggtttacaagcatgctcggtgcagtcctca |
46493445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 46494200 - 46493959
Alignment:
| Q |
1 |
ttcatagcacatcagttttttgttgtaaggaa-aagttgaagcatatagacaaaagttgtaggctaaagaatgttattattattgttttatattttcatt |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||| || || || |||||||| |
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| T |
46494200 |
ttcatagcacatcagttttttgttgtaaggaagaagttgaagcatatagacaaaagttggaggctaaaaaaagttatttttctt-----atgttttcatt |
46494106 |
T |
|
| Q |
100 |
gtaaattatttgaaacgcataaaagaaaacaatttcattttgttttgtcactaaaatcaattgttagttgaaattttg-----------aatataaatta |
188 |
Q |
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||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
46494105 |
gtaaattattttaaacgcataaaagaaaaccatttcattt--ttttgtcactaaaatcaattgttagttgaaatttcgaatatatccaaaatataaatta |
46494008 |
T |
|
| Q |
189 |
tgcatgtattgggtgctagggtttacaagcatgttcggtgcagtcctca |
237 |
Q |
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|||||||||||||||||| | |||||||||||| ||| |||| |||||| |
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| T |
46494007 |
tgcatgtattgggtgctatgatttacaagcatgctcgatgcaatcctca |
46493959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 46491178 - 46491418
Alignment:
| Q |
1 |
ttcatagcacatcagttttttgttgtaaggaa-aagttgaagcatatagacaaaagttgtaggctaaagaa-tgttattattattgttttatattttcat |
98 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| || ||||||| || || || |||||| |
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| T |
46491178 |
ttcatagcacatcagttttttgttgtaaggaagaagttgaagcatatagacaaaagttggaggcgaaaaaaatgttatttttctt-----atgctttcat |
46491272 |
T |
|
| Q |
99 |
tgtaaattatttgaaacgcataaaagaaaacaatttcattttgttttgtcactaaaatcaattgttagttgaaattttg-----------aatataaatt |
187 |
Q |
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||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| |
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| T |
46491273 |
tgttaattattttaaacgcataaaagaaaatcatttcattttgtt--gtcactaaaatcaattgttagttgaaatttcgaatatatccaaaatataaatt |
46491370 |
T |
|
| Q |
188 |
atgcatgtattgggtgctagggtttacaagcatgttcggtgcagtcct |
235 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
46491371 |
atgcatgtattgggtgttagggtttacaagcatgctcggtgcagtcct |
46491418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 46492307 - 46492091
Alignment:
| Q |
23 |
ttgtaaggaa-aagttgaagcatatagacaaaagttgtaggctaaagaatgttattattattgttttatattttcattgtaaattatttgaaacgcataa |
121 |
Q |
| |
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|||||||||| |||||||| |||||||||||||| || | |||||| ||||||||| || || || ||||||||||||||||||| ||| |||||| |
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| T |
46492307 |
ttgtaaggaagaagttgaaacatatagacaaaagatggaagctaaa-aatgttatttttctt-----atgttttcattgtaaattattttaaatgcataa |
46492214 |
T |
|
| Q |
122 |
aagaaaacaatttcattttgttttgtcactaaaatcaattgttagttgaaattttg-----------aatataaattatgcatgtattgggtgctagggt |
210 |
Q |
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||| |||| ||||||||| ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| || |||||| |
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| T |
46492213 |
aaggaaaccatttcattt--ttttgtcactaaaataaattgttagttgaaatttcgactatatccaaaatataaattatgcatgtattggctgttagggt |
46492116 |
T |
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| Q |
211 |
ttacaagcatgttcggtgcagtcct |
235 |
Q |
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||||||||||| ||| ||||||||| |
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| T |
46492115 |
ttacaagcatgctcgatgcagtcct |
46492091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 237
Target Start/End: Original strand, 7177295 - 7177454
Alignment:
| Q |
87 |
ttatattttcattgtaaattatttgaaacgcataaaagaaaacaatttcattttgttttgtcactaaaatcaattgttagttgaaattttg--------- |
177 |
Q |
| |
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|||| ||||||||||||||||| |||||| | ||||| ||||| ||||||||| |||||||| ||||||||| ||||||||||| ||| | |
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| T |
7177295 |
ttatgttttcattgtaaattatatgaaacacgtaaaataaaaccatttcattt--ttttgtcattaaaatcaactgttagttgaattttcgaatatatcc |
7177392 |
T |
|
| Q |
178 |
--aatataaattatgcatgtattgggtgctagggtttacaagcatgttcggtgcagtcctca |
237 |
Q |
| |
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||||||| ||||||||||||| |||| |||||||||||| |||| | ||||||||||||| |
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| T |
7177393 |
aaaatataatttatgcatgtatttggtgttagggtttacaaccatgcttggtgcagtcctca |
7177454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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