View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7003_low_28 (Length: 242)
Name: NF7003_low_28
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 41342756 - 41342961
Alignment:
| Q |
16 |
atgaaagcacgatcagggtcatttacaatgggtgataaggtaccatcataatctaaaaatacgacgatccttttcccaatggcagctttcatcaatctat |
115 |
Q |
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| T |
41342756 |
atgaaagcacgatcagggtcatttacaatgggtgataaggtaccatcataatctaaaaatacgacgatccttttcccaatggcagctttcatcaatctat |
41342855 |
T |
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| Q |
116 |
caaacgagctcaatgcagaaggatactttacctagtaataataataatgcatgccaacaaagatcacatacaatgaccatgattaattaataattacaaa |
215 |
Q |
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|||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41342856 |
caaacgagctcaatgcagaagggtgctttacctag---taataataatgcatgccaacaaagatcacatacaatgaccatgattaattaataattacaaa |
41342952 |
T |
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| Q |
216 |
cttcaatct |
224 |
Q |
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| T |
41342953 |
catcaatct |
41342961 |
T |
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