View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7003_low_3 (Length: 576)

Name: NF7003_low_3
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7003_low_3
NF7003_low_3
[»] chr5 (1 HSPs)
chr5 (324-568)||(26799138-26799392)
[»] chr3 (23 HSPs)
chr3 (324-568)||(10219667-10219921)
chr3 (17-95)||(9837995-9838073)
chr3 (17-95)||(9848873-9848951)
chr3 (17-103)||(10031077-10031163)
chr3 (17-110)||(10657875-10657968)
chr3 (17-110)||(10662590-10662683)
chr3 (41-103)||(10183339-10183401)
chr3 (324-433)||(10125543-10125649)
chr3 (324-433)||(10182888-10182994)
chr3 (214-282)||(10030921-10030989)
chr3 (214-282)||(10125872-10125940)
chr3 (17-88)||(9837797-9837868)
chr3 (17-88)||(9848675-9848746)
chr3 (324-433)||(10259337-10259443)
chr3 (214-270)||(10259657-10259713)
chr3 (17-68)||(10126053-10126104)
chr3 (18-89)||(11768381-11768452)
chr3 (17-59)||(10516626-10516668)
chr3 (41-73)||(10434963-10434995)
chr3 (41-74)||(10439821-10439854)
chr3 (324-389)||(10030636-10030697)
chr3 (57-85)||(10259818-10259846)
chr3 (17-53)||(10259863-10259899)
[»] scaffold0083 (1 HSPs)
scaffold0083 (17-61)||(50746-50790)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 324 - 568
Target Start/End: Complemental strand, 26799392 - 26799138
Alignment:
Q  324 ttagcatgtgaatggactgacaacagtactgtgtttggatggttagttggcagtacatatggtaaat---gtagactcaagaaaactcacatgtgaatga 420  Q
    ||||| |||||||| ||  ||||||||||||| ||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  26799392 ttagcttgtgaatgaaccaacaacagtactgtttttggatggttggttggcagtacatatggtaaataatgtagactcaagaaaactcacatgtgaatga 26799293  T
Q  421 atagtaatagtaacaactgatctat-------ggacatttccagcattagacgtgttacaccgacacttataaatagtaattacattgaattatattann 513  Q
    |||||||||||||||| ||||||||       || ||||||  | |||||  ||||||||||||||||| ||||||||||||||||||||||||||||      
T  26799292 atagtaatagtaacaattgatctatgaagcacgggcatttcttgtattaggtgtgttacaccgacacttgtaaatagtaattacattgaattatattatt 26799193  T
Q  514 nnnnncaaactattaactgtgtcgacgtgtcagtatccgtgttgtgtttgatgtc 568  Q
          |||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  26799192 ttttttaaactattaactgtgtcgacgtatcagtatctgtgtcgtgtttgatgtc 26799138  T

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Target: chr3 (Bit Score: 122; Significance: 3e-62; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 324 - 568
Target Start/End: Complemental strand, 10219921 - 10219667
Alignment:
Q  324 ttagcatgtgaatggactgacaacagtactgtgtttggatggttagttggcagtacatatggtaaat---gtagactcaagaaaactcacatgtgaatga 420  Q
    ||||| |||||||| ||  ||||||||||||| ||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  10219921 ttagcttgtgaatgaaccaacaacagtactgtttttggatggttggttggcagtacatatggtaaataatgtagactcaagaaaactcacatgtgaatga 10219822  T
Q  421 atagtaatagtaacaactgatctat-------ggacatttccagcattagacgtgttacaccgacacttataaatagtaattacattgaattatattann 513  Q
    |||||||||||||||| ||||||||       || ||||||  | |||||  ||||||||||||||||| ||||||||||||||||||||||||||||      
T  10219821 atagtaatagtaacaattgatctatgaagcacgggcatttcttgtattaggtgtgttacaccgacacttgtaaatagtaattacattgaattatattatt 10219722  T
Q  514 nnnnncaaactattaactgtgtcgacgtgtcagtatccgtgttgtgtttgatgtc 568  Q
          |||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  10219721 ttttttaaactattaactgtgtcgacgtatcagtatctgtgtcgtgtttgatgtc 10219667  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 9838073 - 9837995
Alignment:
Q  17 cacatccctcaaaataattgatacaaagaaaaagaaaaagttgcacactcaattaaagcaatcggaatctttatgtaca 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  9838073 cacatccctcaaaataattgatacaaagaaaaagaaaaagttgcacactcaattaaaataatcggaatctttatgtaca 9837995  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 9848951 - 9848873
Alignment:
Q  17 cacatccctcaaaataattgatacaaagaaaaagaaaaagttgcacactcaattaaagcaatcggaatctttatgtaca 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  9848951 cacatccctcaaaataattgatacaaagaaaaagaaaaagttgcacactcaattaaaataatcggaatctttatgtaca 9848873  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 10031163 - 10031077
Alignment:
Q  17 cacatccctcaaaataattgatacaaagaaaaagaaaaagttgcacactcaattaaagcaatcggaatctttatgtacatttttact 103  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || |||||||    
T  10031163 cacatccctcaaaataattgatacaaagaaaaagaaaaagttccacactcaactaaagcaatcggaatctttatgtccacttttact 10031077  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 10657968 - 10657875
Alignment:
Q  17 cacatccctcaaaataattgatacaaagaaaaagaaaaagttgcacactcaattaaagcaatcggaatctttatgtacatttttactttaggaa 110  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||| | |||||||||||||||||||||    
T  10657968 cacatccttcaaaataattgatacaaagaaaaaggaaaagttacacactcaattaaagaaatctgaatctctgtgtacatttttactttaggaa 10657875  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 10662683 - 10662590
Alignment:
Q  17 cacatccctcaaaataattgatacaaagaaaaagaaaaagttgcacactcaattaaagcaatcggaatctttatgtacatttttactttaggaa 110  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||| | |||||||||||||||||||||    
T  10662683 cacatccttcaaaataattaatacaaagaaaaaggaaaagttgcacactcaattaaagaaatctgaatctctgtgtacatttttactttaggaa 10662590  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 10183401 - 10183339
Alignment:
Q  41 aaagaaaaagaaaaagttgcacactcaattaaagcaatcggaatctttatgtacatttttact 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10183401 aaagaaaaagaaaaagttgcacactcaattaaagcaatcggaatctttatgtacacttttact 10183339  T

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Target: chr3; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 324 - 433
Target Start/End: Complemental strand, 10125649 - 10125543
Alignment:
Q  324 ttagcatgtgaatggactgacaacagtactgtgtttggatggttagttggcagtacatatggtaaatgta-gactcaagaaaactcacatgtgaatgaat 422  Q
    ||||||| |||||| || |||||||||||||| ||||||||||| |    |||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  10125649 ttagcatatgaatgaaccgacaacagtactgtttttggatggtttg----cagtacatatggtaaaggtaagactcaataaaactcacatgtgaatgaat 10125554  T
Q  423 agtaatagtaa 433  Q
    |||||||||||    
T  10125553 agtaatagtaa 10125543  T

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Target: chr3; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 324 - 433
Target Start/End: Complemental strand, 10182994 - 10182888
Alignment:
Q  324 ttagcatgtgaatggactgacaacagtactgtgtttggatggttagttggcagtacatatggtaaatgta-gactcaagaaaactcacatgtgaatgaat 422  Q
    ||||||| |||||| || |||||||||||||| ||||||||||| |    |||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  10182994 ttagcatatgaatgaaccgacaacagtactgtttttggatggtttg----cagtacatatggtaaaggtaagactcaataaaactcacatgtgaatgaat 10182899  T
Q  423 agtaatagtaa 433  Q
    |||||||||||    
T  10182898 agtaatagtaa 10182888  T

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Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 10030989 - 10030921
Alignment:
Q  214 agtattacccagcaaaagagataaatgtaataatcatttggtgataagtatatgattaccgaaaaatat 282  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  10030989 agtattacccaacaaaagagataaatgtaataatcatttggtgataagtatatgattgctgaaaaatat 10030921  T

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Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 10125940 - 10125872
Alignment:
Q  214 agtattacccagcaaaagagataaatgtaataatcatttggtgataagtatatgattaccgaaaaatat 282  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  10125940 agtattacccaacaaaagagataaatgtaataatcatttggtgataagtatatgattgctgaaaaatat 10125872  T

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Target: chr3; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 9837868 - 9837797
Alignment:
Q  17 cacatccctcaaaataattgatacaaagaaaaagaaaaagttgcacactcaattaaagcaatcggaatcttt 88  Q
    |||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  9837868 cacatcccacaaaataattgatgcaaagaaaaaggaaaagttgcacactcaattaaagccatcggaatcttt 9837797  T

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Target: chr3; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 9848746 - 9848675
Alignment:
Q  17 cacatccctcaaaataattgatacaaagaaaaagaaaaagttgcacactcaattaaagcaatcggaatcttt 88  Q
    |||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  9848746 cacatcccacaaaataattgatgcaaagaaaaaggaaaagttgcacactcaattaaagccatcggaatcttt 9848675  T

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Target: chr3; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 324 - 433
Target Start/End: Complemental strand, 10259443 - 10259337
Alignment:
Q  324 ttagcatgtgaatggactgacaacagtactgtgtttggatggttagttggcagtacatatggtaaatgta-gactcaagaaaactcacatgtgaatgaat 422  Q
    ||||||| |||||| || |||||||||||||| ||||||||||| |    |||||||||||||||| ||| ||||||| ||||||||||||||||||| |    
T  10259443 ttagcatatgaatgaaccgacaacagtactgtttttggatggtttg----cagtacatatggtaaaggtaagactcaataaaactcacatgtgaatgagt 10259348  T
Q  423 agtaatagtaa 433  Q
    |||||||||||    
T  10259347 agtaatagtaa 10259337  T

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Target: chr3; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 10259713 - 10259657
Alignment:
Q  214 agtattacccagcaaaagagataaatgtaataatcatttggtgataagtatatgatt 270  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  10259713 agtattacccaacaaaagagataaatgtaataatcatttgctgataagtatatgatt 10259657  T

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Target: chr3; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 10126104 - 10126053
Alignment:
Q  17 cacatccctcaaaataattgatacaaagaaaaagaaaaagttgcacactcaa 68  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10126104 cacatccctcaaaataattgatacaaagcaaaagaaaaagttgcacactcaa 10126053  T

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Target: chr3; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 11768452 - 11768381
Alignment:
Q  18 acatccctcaaaataattgatacaaagaaaaagaaaaagttgcacactcaattaaagcaatcggaatcttta 89  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||  |||| ||||||||    
T  11768452 acatcccacaaaataattgatacaaagaaaaaggaaaagttgcacacttaattaaaggcatcgaaatcttta 11768381  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 10516668 - 10516626
Alignment:
Q  17 cacatccctcaaaataattgatacaaagaaaaagaaaaagttg 59  Q
    ||||||| |||||||||||||||||||||||||| ||||||||    
T  10516668 cacatccttcaaaataattgatacaaagaaaaaggaaaagttg 10516626  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 10434963 - 10434995
Alignment:
Q  41 aaagaaaaagaaaaagttgcacactcaattaaa 73  Q
    |||||||||||||||||||||||||||||||||    
T  10434963 aaagaaaaagaaaaagttgcacactcaattaaa 10434995  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 10439854 - 10439821
Alignment:
Q  41 aaagaaaaagaaaaagttgcacactcaattaaag 74  Q
    ||||||||||||||||||| ||||||||||||||    
T  10439854 aaagaaaaagaaaaagttgtacactcaattaaag 10439821  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 389
Target Start/End: Complemental strand, 10030697 - 10030636
Alignment:
Q  324 ttagcatgtgaatggactgacaacagtactgtgtttggatggttagttggcagtacatatggtaaa 389  Q
    ||||||| |||||| || |||||||||||||| ||||||||    ||| |||||||||||||||||    
T  10030697 ttagcatctgaatgaaccgacaacagtactgtttttggatg----gtttgcagtacatatggtaaa 10030636  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 10259846 - 10259818
Alignment:
Q  57 ttgcacactcaattaaagcaatcggaatc 85  Q
    |||||||||||||||||||||||||||||    
T  10259846 ttgcacactcaattaaagcaatcggaatc 10259818  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 10259899 - 10259863
Alignment:
Q  17 cacatccctcaaaataattgatacaaagaaaaagaaa 53  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  10259899 cacatccttcaaaataattgatacaaagcaaaagaaa 10259863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 50746 - 50790
Alignment:
Q  17 cacatccctcaaaataattgatacaaagaaaaagaaaaagttgca 61  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||    
T  50746 cacatcccacaaaataattgatacaaagaaaaaggaaaaattgca 50790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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