View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7003_low_30 (Length: 237)
Name: NF7003_low_30
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_low_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 74 - 221
Target Start/End: Complemental strand, 7609391 - 7609244
Alignment:
| Q |
74 |
ggaactaaacatggatgaaaatctctctacaatcatcaaacaataacaacttaagagaaaaagaaacgaccatcccaaaacttttgaaatatacaaacaa |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |
|
|
| T |
7609391 |
ggaactaaacatggatgaaaatctctctacaatcatcaaacaaaaacaacttaagagaaaaagaaaggaccatcccaaaactttcaaaatatacaatcaa |
7609292 |
T |
|
| Q |
174 |
catgacaacccttctatcctgccaacatatattcatcgaacaacaacc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7609291 |
catgacaacccttctatcctgccaacatatattcatcgaacaacaacc |
7609244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 28559650 - 28559603
Alignment:
| Q |
84 |
atggatgaaaatctctctacaatcatcaaacaataacaacttaagaga |
131 |
Q |
| |
|
||||||| ||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
28559650 |
atggatggaaatccctctacaatcatcaaaaaataacaacttaagaga |
28559603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 7609451 - 7609419
Alignment:
| Q |
13 |
gagatgaattgtgaagaaaagtgaacatggatg |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
7609451 |
gagatgaattgtgaagaaaagtgaacatggatg |
7609419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University