View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7003_low_31 (Length: 235)
Name: NF7003_low_31
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 49692647 - 49692441
Alignment:
| Q |
15 |
ggaacaacctcgatagtccaaaatctgctaacttaacagaaaaattaatgtcaagtagaatgttggtggttttgacatcacggtgaatgatgtcggaagc |
114 |
Q |
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| T |
49692647 |
ggaacaaccttgatagtccaaaatctgctaacttaacagaaaaattaatgtcaagtagaatgttggtggttttgacatcacggtgaatgatgtcggaagc |
49692548 |
T |
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| Q |
115 |
atgtagataagccaatgcagaagcggtttctattgcgatttgcattcgaataagccatgtcagcaaaccggctctagctaaatcaccatggagatggcta |
214 |
Q |
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| T |
49692547 |
atgtagataagccaatgcagaagcggtttctattgcgatttgcattcgaataagccatgtcagcaaaccggctctagctaaatcaccatggagatggcta |
49692448 |
T |
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| Q |
215 |
gacacag |
221 |
Q |
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| T |
49692447 |
gccacag |
49692441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 49675536 - 49675426
Alignment:
| Q |
63 |
tgtcaagtagaatgttggtggttttgacatcacggtgaatgatgtcggaagcatgtagataagccaatgcagaagcggtttctattgcgatttgcattcg |
162 |
Q |
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| T |
49675536 |
tgtcaaggagaatgttgtttgttttcacatcacggtgaatgatttcagaagcatggagataagccaaagcagtagcagtctctaaggcaactttcattcg |
49675437 |
T |
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| Q |
163 |
aataagccatg |
173 |
Q |
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|||| |||||| |
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| T |
49675436 |
aatatgccatg |
49675426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 49667396 - 49667299
Alignment:
| Q |
32 |
ccaaaatctgctaacttaacagaaaaattaatgtcaagtagaatgttggtggttttgacatcacggtgaatgatgtcggaagcatgtagataagccaa |
129 |
Q |
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| T |
49667396 |
ccaaaatctgcaactttaacaccaaaattgccgtcaagaagtatgttgctggttttcacgtcacggtgaatgatcccagaagcatggagataagccaa |
49667299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 49671329 - 49671269
Alignment:
| Q |
71 |
agaatgttggtggttttgacatcacggtgaatgatgtcggaagcatgtagataagccaatg |
131 |
Q |
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| T |
49671329 |
agaatgtttttggtttttacgtcacggtggatgatgcctgaagcatgcagataagccaatg |
49671269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 22783673 - 22783544
Alignment:
| Q |
32 |
ccaaaatctgctaacttaacagaaaaattaatgtcaagtagaatgttggtggttttgacatcacggtgaatgatgtcggaagcatgtagataagccaatg |
131 |
Q |
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| T |
22783673 |
ccaaaatcagcaaccttaacacagaaattgttgtcaaggagaatgttggtggttttcacgtctcggtgaatgacatcagaggcatgaagataagttaatg |
22783574 |
T |
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| Q |
132 |
cagaagcggtttctattgcgatttgcattc |
161 |
Q |
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|| ||||||||||| || |||| ||||| |
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| T |
22783573 |
cactggcggtttctatggctattttcattc |
22783544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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