View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7003_low_33 (Length: 217)
Name: NF7003_low_33
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_low_33 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 3172400 - 3172581
Alignment:
| Q |
17 |
aatatatgtgagtgaagaaaaccaatttgaaaaaacgacacccttgtgccgctccctcattcctaattttccaaatccaaatgttattttcttctctttg |
116 |
Q |
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| T |
3172400 |
aatatatgtgagtgaagaaaaccaatttgaaaaaacgacacccttgtgccgctccttcattcctaattttccaaatccaaatgttattttcttctctttg |
3172499 |
T |
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| Q |
117 |
gaggcagttaaattttgaataattagttgtctcaaattgattaaatttgagacatcttttgtagaaaattcaacgtcttcac |
198 |
Q |
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| T |
3172500 |
gaggcagttaaattttgaataattagttgtctcaaattgattaaatttgagacatcttttgtagaaaattcaacgtcttcac |
3172581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 3168952 - 3168994
Alignment:
| Q |
141 |
agttgtctcaaattgattaaatttgagacatcttttgtagaaa |
183 |
Q |
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| T |
3168952 |
agttgtctcaaattgattaaattgtagacatcttttatagaaa |
3168994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 9849800 - 9849836
Alignment:
| Q |
147 |
ctcaaattgattaaatttgagacatcttttgtagaaa |
183 |
Q |
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| T |
9849800 |
ctcaaattgattaattttgagacaacttttgtagaaa |
9849836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 3917865 - 3917907
Alignment:
| Q |
148 |
tcaaattgattaaatttgagacatcttttgtagaaaattcaac |
190 |
Q |
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| T |
3917865 |
tcaaattgattaacttagagacatcttttgtagaaatttcaac |
3917907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 46881 - 46840
Alignment:
| Q |
144 |
tgtctcaaattgattaaatttgagacatcttttgtagaaaat |
185 |
Q |
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| T |
46881 |
tgtctcaaattgattaaatttgagacatttttttgagaaaat |
46840 |
T |
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