View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7003_low_34 (Length: 213)
Name: NF7003_low_34
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 30012854 - 30013038
Alignment:
| Q |
12 |
aacctgtgctaaagatgttgaagacaagaaaaagggacaaaacaattgagaaaacaagactaaagagatgctctatttaaagaaaacaaaacataaacat |
111 |
Q |
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| T |
30012854 |
aacctttgctaaagatgttgaagacaagaaaaagggacaaaacaattgagaaaacaagactaaagagatgctctatttaaagaaaacaaaacataaacat |
30012953 |
T |
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| Q |
112 |
attaattgaaagtagttgnnnnnnngagttattacctctcttggccggcagtgtcccatatttgtgctttgatgagcttatctct |
196 |
Q |
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| T |
30012954 |
attaattgaaagtagttgaaaaaaagagttattacctctcttggccggcagtgtcccatatttgtgctttgatgagcttatctct |
30013038 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 45233664 - 45233717
Alignment:
| Q |
145 |
acctctcttggccggcagtgtcccatatttgtgctttgatgagcttatctctga |
198 |
Q |
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| T |
45233664 |
acctttcttggccggcagtgtcccatatttgagctttgatgagtttatctctga |
45233717 |
T |
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