View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7003_low_4 (Length: 573)
Name: NF7003_low_4
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 555
Target Start/End: Original strand, 35072250 - 35072825
Alignment:
| Q |
7 |
gtatcatagacattttgttgtgagattaaaatattgcagagattgtgttatgttgtagagacatgttctgtcttatttgaagttgttttggaaggtgaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35072250 |
gtatcatagacattttgttgtgagattaaaatattgcagagattgtgttatgttgtagagacatgttctgtcttatttgaagttgttttggaaggtgagg |
35072349 |
T |
|
| Q |
107 |
agaattctccgtaaacggacataattagatgtctccattcttaggatgttttacttgatctttgtggaatttatgttatgctattattaactcttgtgta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35072350 |
agaattctccgtaaacggacataattagatgtctccattcttaggatattctacttgatctttgtggaatttatgttatgctattattaactcttgtgta |
35072449 |
T |
|
| Q |
207 |
taaatagaatacaat---accaatacttaaaatagacataaaaaacgatgtgagacaatagatgataattaaaccatt----------------cttaca |
287 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
35072450 |
taaatagaatacaataccaccaatacttaaaatagacataaaaaacgatgtgagacaatatatgataattaaaccattcttacataatttattccttaca |
35072549 |
T |
|
| Q |
288 |
atagataattcacattactgaatttacttttacataaaacagatacgcattacaatgaaacaga--------acgtacactgcacactattctcaaccca |
379 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |
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|
| T |
35072550 |
aaatataattcacattactgaatttacttttacataaaacagatacgcattacaatgaaacagaacacacacacacacacttcacactattctcaaccca |
35072649 |
T |
|
| Q |
380 |
aaaacagagtaatagagcttggatatgtgttcaaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgaga |
479 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35072650 |
aaaacagagtaatagagcttgaatatgtgttcaaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgaga |
35072749 |
T |
|
| Q |
480 |
acaccattctccattgcagctttcacttgattcatcttggcattttcgggcaatctgaatctcctcatgaactttc |
555 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| || ||||| || || |||| || ||||||||||| |||| |
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|
| T |
35072750 |
acaccattctccattgcagctttcacttgatccattttcgcattctctggttatctaaacctcctcatgaattttc |
35072825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 408 - 555
Target Start/End: Original strand, 36296451 - 36296598
Alignment:
| Q |
408 |
gttcaaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt |
507 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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|
| T |
36296451 |
gttcaaccagagatctcaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcacct |
36296550 |
T |
|
| Q |
508 |
gattcatcttggcattttcgggcaatctgaatctcctcatgaactttc |
555 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
36296551 |
gatccatcttggcattttcgggcaatctgaacctcctcataaactttc |
36296598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 408 - 550
Target Start/End: Complemental strand, 35098004 - 35097862
Alignment:
| Q |
408 |
gttcaaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt |
507 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35098004 |
gttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt |
35097905 |
T |
|
| Q |
508 |
gattcatcttggcattttcgggcaatctgaatctcctcatgaa |
550 |
Q |
| |
|
| | ||| || ||||| || ||||||||||| ||||||||||| |
|
|
| T |
35097904 |
ggtccattttcgcattctcaggcaatctgaacctcctcatgaa |
35097862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 408 - 550
Target Start/End: Complemental strand, 35098293 - 35098151
Alignment:
| Q |
408 |
gttcaaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt |
507 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35098293 |
gttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt |
35098194 |
T |
|
| Q |
508 |
gattcatcttggcattttcgggcaatctgaatctcctcatgaa |
550 |
Q |
| |
|
| | ||| || ||||| || ||||||||||| ||||||||||| |
|
|
| T |
35098193 |
ggtccattttcgcattctcaggcaatctgaacctcctcatgaa |
35098151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 36935859 - 36935971
Alignment:
| Q |
412 |
aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctcc-attgcagctttcacttgat |
510 |
Q |
| |
|
|||||||||| || |||| ||| || ||||| |||||||| ||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36935859 |
aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttgat |
36935958 |
T |
|
| Q |
511 |
tcatcttggcatt |
523 |
Q |
| |
|
||| || ||||| |
|
|
| T |
36935959 |
ccattttagcatt |
36935971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 36940530 - 36940618
Alignment:
| Q |
465 |
acagtaacagtgagaacaccattctccattgcagctttcacttgattcatcttggcattttcgggcaatctgaatctcctcatgaactt |
553 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| ||||| ||| || ||||| || |||||||| ||||||||||||||||| |
|
|
| T |
36940530 |
acagtgacagtgagaatgccattctccattgcagctttcatttgatccattttagcattctcaggcaatcttaatctcctcatgaactt |
36940618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 412 - 555
Target Start/End: Complemental strand, 35107178 - 35107035
Alignment:
| Q |
412 |
aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatt |
511 |
Q |
| |
|
||||||||||||| |||| || || ||||| ||||| | ||||| || || ||||| |||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
35107178 |
aaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagcgagaacaccattctccatagcagctttcacttgatc |
35107079 |
T |
|
| Q |
512 |
catcttggcattttcgggcaatctgaatctcctcatgaactttc |
555 |
Q |
| |
|
||| || ||||| || || ||||| || ||||||||||| |||| |
|
|
| T |
35107078 |
cattttcgcattctctggtaatctaaacctcctcatgaattttc |
35107035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 491
Target Start/End: Complemental strand, 36961545 - 36961469
Alignment:
| Q |
415 |
cagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctcc |
491 |
Q |
| |
|
||||||| || |||| |||||| ||||||| || |||||||| || |||| ||| ||||||||||||||||||||| |
|
|
| T |
36961545 |
cagagatatcaatggtcttaactccaggttttttcacttcttccttaggaatagttacagtgagaacaccattctcc |
36961469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 155 - 555
Target Start/End: Original strand, 24013928 - 24014324
Alignment:
| Q |
155 |
ttttacttgatctttgtggaatttatgttatgctattattaactcttgtgtataaatagaatacaataccaatacttaaaatagacataaaaaacgatgt |
254 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24013928 |
ttttacttgatccttgtggaatttatgttatgctattattaactcttgtgtataaatagaatacaataccaatacttaaaatagacataaaaaacgatgt |
24014027 |
T |
|
| Q |
255 |
gagacaatagatgataattaaaccatt----------------cttacaatagataattcacattactgaatttacttttacataaaacagatacgcatt |
338 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| | |||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
24014028 |
gagacaatagat---aattaaaccattcttacataatttattccttacaaaatataattcaca-----gaatttacttttacataaaacaga-acgcac- |
24014117 |
T |
|
| Q |
339 |
acaatgaaacagaacgtacactgcacactattctcaacccaaaaacagagtaatagagcttggatatgtgttcaaccagagatttcgatggacttaacat |
438 |
Q |
| |
|
||| ||| ||||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24014118 |
--------acacaac--acacttcacaatattctcaacctaaaaacagagtaatagagcttgaatatgtgttcaaccagagatttcgatggacttaacat |
24014207 |
T |
|
| Q |
439 |
caggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgattcatcttggcattttcgggcaatctgaa |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||| |
|
|
| T |
24014208 |
caggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattttcgggcaacctgaa |
24014307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 412 - 555
Target Start/End: Original strand, 24040738 - 24040881
Alignment:
| Q |
412 |
aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatt |
511 |
Q |
| |
|
|||||||||| || |||| ||| || | ||| |||||||||||||| || || ||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24040738 |
aaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcacttgatc |
24040837 |
T |
|
| Q |
512 |
catcttggcattttcgggcaatctgaatctcctcatgaactttc |
555 |
Q |
| |
|
||| || ||||| || || ||||| || ||||||||||| |||| |
|
|
| T |
24040838 |
cattttcgcattctctggtaatctaaacctcctcatgaattttc |
24040881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 553
Target Start/End: Complemental strand, 34919274 - 34919135
Alignment:
| Q |
414 |
ccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgattca |
513 |
Q |
| |
|
||||| ||||| || |||||||| ||| ||||| ||||||| || |||||||||||||| ||||| ||||||||||| ||||||| || |||| || |
|
|
| T |
34919274 |
ccagaaatttcaatagacttaacctcactcttcttctcttcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatcca |
34919175 |
T |
|
| Q |
514 |
tcttggcattttcgggcaatctgaatctcctcatgaactt |
553 |
Q |
| |
|
| || |||| || ||||| || || |||||||| ||||| |
|
|
| T |
34919174 |
ttttaacattctcaggcaacctaaacctcctcataaactt |
34919135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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