View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7003_low_6 (Length: 489)
Name: NF7003_low_6
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 25 - 473
Target Start/End: Original strand, 11848235 - 11848686
Alignment:
| Q |
25 |
atggttggtggttgtgtatcaatttgcgatgacaacaacataaacagc---tacttcaatttgagtagtaatggttgtaatggaagatattgttgtgaaa |
121 |
Q |
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| T |
11848235 |
atggttggtggttgtgtatcaatttgcgatgacaacaacataaacagcaattacttcaatttgagtagtgatggttgtaatggaagatattgttgtgaaa |
11848334 |
T |
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| Q |
122 |
cttcattgcctatgcatctttcagaatataatgcgacgttacaaggtttaaggggaccaaatattagtgagtgtagctatgctttgattttaagtcgtcg |
221 |
Q |
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| T |
11848335 |
cttcattgcctatgcatctttcagaatataatgcgacgttacaaggtttaaggggaccaaatattagtgagtgtagctatgctttgattttaagtcgtcg |
11848434 |
T |
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| Q |
222 |
ttgggtatcttttgatgggttgtcaccatatttgagtacttattatcttgagaattttaataagttggaggatatggagtatgcaccagcaatgcttgag |
321 |
Q |
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| T |
11848435 |
ttgggtatattttgatgggttgtcatcatatttgagtacttattatcttgagaattttaataagttggaggatatggagtatgcaccagcaatgcttgag |
11848534 |
T |
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| Q |
322 |
tgggaaattttgaatgatatgttgattaattctacatttcaacttccttcagattcatattcaaattgttatgattccaaagttacatccatagataaca |
421 |
Q |
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| T |
11848535 |
tgggaaattttgaatgatatgttgattaattctacatttcaacttccttcagattcatattcaaattgttatgattcccaagttacatccataaataaca |
11848634 |
T |
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| Q |
422 |
gaaacactggtcggcaatgccaatgcttctggggttactttggcaatcccta |
473 |
Q |
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| T |
11848635 |
gaaacactggtcggcaatgccaatgcttctcgggttactttggcaatcccta |
11848686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 473
Target Start/End: Original strand, 11843548 - 11843962
Alignment:
| Q |
20 |
gaacaatggttggtggttgtgtatcaatttgcgatgacaacaacataaacagctacttcaatttgagtagtaatggttgtaatggaagatattgttgtga |
119 |
Q |
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| T |
11843548 |
gaacaacggttggtggttgcgtatcaatttgcgatgatggcaactttaacaacaacttcaattccagtaacgaccgttgcaatggaagatattgttgtga |
11843647 |
T |
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| Q |
120 |
aacttcattgcctatgcatctttcagaatataatgcgacgttacaaggtttaaggggaccaaatattagtgagtgtagctatgctttgattttaagtcgt |
219 |
Q |
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| T |
11843648 |
aacttcattgcctacgcatctttcggaatataatgcaacgtttcaaggtttaagcgaacaaagtattgatcagtgtagttatgctttgattttaagtgat |
11843747 |
T |
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| Q |
220 |
cgttgggtatcttttgatgggttgtcaccatatttgagtacttattatcttgagaattttaataagttggaggatatggagtatgcaccagcaatgcttg |
319 |
Q |
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| T |
11843748 |
aattggatatcttttgatgggt------catatttgagtac---------------ttttaatgagttggggaatatggagtatgcaccagcaatgcttg |
11843826 |
T |
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| Q |
320 |
agtgggaaattttgaatgatatgttgattaattctacatttcaacttccttcagattcatattcaaattgttatgattccaaagttacatccatagataa |
419 |
Q |
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| T |
11843827 |
agtgggaaatt------------ttggttaattcgacatttcaacttccttcagattcat------attgttatgattccaaagttacatctttaaataa |
11843908 |
T |
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| Q |
420 |
cagaaacactggtcggcaatgccaatgcttctggggttactttggcaatcccta |
473 |
Q |
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| T |
11843909 |
cagaaccactggtcggaaatgtcaatgctcctcgggttacaccggcaatcccta |
11843962 |
T |
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