View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7003_low_7 (Length: 471)
Name: NF7003_low_7
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_low_7 |
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| [»] scaffold1521 (1 HSPs) |
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| [»] scaffold0152 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 8e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 59 - 296
Target Start/End: Complemental strand, 37978966 - 37978726
Alignment:
| Q |
59 |
gatatgatactgtatgcagctaaggacacacactatttattacatatagcacaactactagtccttgaggccagaggaaaagggttatttattgaacgaa |
158 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
37978966 |
gatatgatactgtatggagctaaggacacacactatttattacatatagcacaactactagtccttgaggccagagcaaaagggttatttattgtacgaa |
37978867 |
T |
|
| Q |
159 |
atttgggagagatcagagaagttcagccaaaagttgtgtaagaatgaaagaaccattgctagtacaaagccgattgtcaaaaagaaagatctgggcgaat |
258 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| |
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| T |
37978866 |
atttgggagagatcagagaagctcagccaaaagttgtgtaataatgaaagaaccattgctagtgcaaagccaaatgtcaaaaagaaagatctgggcgaat |
37978767 |
T |
|
| Q |
259 |
tagacttaactc---gagatatgcatgaggtaatttatcta |
296 |
Q |
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|||||||||||| |||||| |||||| ||||||||||| |
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| T |
37978766 |
tagacttaactccttcagatatacatgagctaatttatcta |
37978726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 305 - 456
Target Start/End: Complemental strand, 37978140 - 37977989
Alignment:
| Q |
305 |
tcatagtaaatgtaaaaacttttttattgcaatgaattatgtacgttagaatcatagagtctagcaattaaattagcaatttcaattaaaagagttataa |
404 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37978140 |
tcatagtaaatgtaaaaacttttttattgcaataaattatatacgttagaatcatagagtctggcaattaaattagcaatttcaattaaaagagttataa |
37978041 |
T |
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| Q |
405 |
agggcacatgttttagtggaacttgtttgtcttagaacgcaatcagctatct |
456 |
Q |
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| T |
37978040 |
agggcacatgttttagtggaacttgtttgtcttagaacgcaatcagctatct |
37977989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 37979111 - 37978967
Alignment:
| Q |
13 |
attctcaattttagctatacgattggagagaagg-ccattaacgcatgatatgatactgtatgcagctaaggacacacactatttattacatatagcaca |
111 |
Q |
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||||||| |||||| || |||||||||| ||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37979111 |
attctcatttttagttacacgattggagggaaagaccattaacgcatgatatgatactgtatggagctaaggacacacactatttattacatatagcaca |
37979012 |
T |
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| Q |
112 |
actactagtccttgaggccagaggaaaagggttatttattgaacg |
156 |
Q |
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| T |
37979011 |
actactagtccttgaggccagagcaaaagggttatttattgaacg |
37978967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 305 - 407
Target Start/End: Complemental strand, 10183259 - 10183157
Alignment:
| Q |
305 |
tcatagtaaatgtaaaaacttttttattgcaatgaattatgtacgttagaat-catagagtctagcaattaaattagcaatttcaattaaaagagttata |
403 |
Q |
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|||| ||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10183259 |
tcatggtaaatgtaaaaactttttgattgcaaa-aattatgcacgttagaattcatagagtctagcaattaaattagccatttcaattaaaagagttata |
10183161 |
T |
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| Q |
404 |
aagg |
407 |
Q |
| |
|
|||| |
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| T |
10183160 |
aagg |
10183157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 305 - 407
Target Start/End: Original strand, 39063350 - 39063452
Alignment:
| Q |
305 |
tcatagtaaatgtaaaaacttttttattgcaatgaattatgtacgttagaat-catagagtctagcaattaaattagcaatttcaattaaaagagttata |
403 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39063350 |
tcatggtaaatgtaaaaactttttgattgcaaa-aattatgcacgttagaattcatagagtctagcaattaaattagccatttcaattaaaagagttata |
39063448 |
T |
|
| Q |
404 |
aagg |
407 |
Q |
| |
|
|||| |
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|
| T |
39063449 |
aagg |
39063452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 305 - 407
Target Start/End: Complemental strand, 18878013 - 18877911
Alignment:
| Q |
305 |
tcatagtaaatgtaaaaacttttttattgcaatgaattatgtacgttagaat-catagagtctagcaattaaattagcaatttcaattaaaagagttata |
403 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18878013 |
tcatggtaaatgtaaaaactttttgattgcaaa-aattatgcacgttagaattcatagagtctagcaattaaattagccatttcaattaaaagagttata |
18877915 |
T |
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| Q |
404 |
aagg |
407 |
Q |
| |
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|||| |
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| T |
18877914 |
aagg |
18877911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 305 - 407
Target Start/End: Original strand, 33518622 - 33518724
Alignment:
| Q |
305 |
tcatagtaaatgtaaaaacttttttattgcaatgaattatgtacgttagaat-catagagtctagcaattaaattagcaatttcaattaaaagagttata |
403 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33518622 |
tcatggtaaatgtaaaaactttttgattgcaaa-aattatgcacgttagaattcatagagtctagcaattaaattagccatttcaattaaaagagttata |
33518720 |
T |
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| Q |
404 |
aagg |
407 |
Q |
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|||| |
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| T |
33518721 |
aagg |
33518724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1521 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1521
Description:
Target: scaffold1521; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 350 - 302
Alignment:
| Q |
326 |
ttttattgcaatgaattatgtacgttagaa--tcatagagtctagcaat |
372 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
350 |
ttttattgcaatgaattatgtacgttagaaattcacagagtctagcaat |
302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 30369 - 30417
Alignment:
| Q |
326 |
ttttattgcaatgaattatgtacgttagaa--tcatagagtctagcaat |
372 |
Q |
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|
|||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
30369 |
ttttattgcaatgaattatgtacgttagaaattcacagagtctagcaat |
30417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 31160 - 31208
Alignment:
| Q |
326 |
ttttattgcaatgaattatgtacgttagaa--tcatagagtctagcaat |
372 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
31160 |
ttttattgcaatgaattatgtacgttagaaattcacagagtctagcaat |
31208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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