View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7004_high_1 (Length: 447)
Name: NF7004_high_1
Description: NF7004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7004_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 88 - 439
Target Start/End: Complemental strand, 44560983 - 44560632
Alignment:
| Q |
88 |
ttaaacagactgtagagttataaacaaagattaggcttgtaatggccactcttgtaccgaatacttgtcattgtaccaaagaaagtaggctacttagttg |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44560983 |
ttaaacagactgtagagttataaacaaagattaggcttgtaatggccactcttgcaccgaatacttgtcattgtaccaaagaaagtaggctacttagttg |
44560884 |
T |
|
| Q |
188 |
atattaagtttgattaagtcttttatttttcctgtactggttgatgaatgttccttttatgtcgataagggatcttcttaaaatgatatatttagttttc |
287 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44560883 |
atattaagtttgattaaatcttttatttttcctgtactggttgatgaatgttccttttatgtcgataagggatcttcttaaaatgatatatttagttttc |
44560784 |
T |
|
| Q |
288 |
aaaactcgacaatatgatttttacgcctagtccttattatagcaatatttgatttttcccgcttaatatgcttatgctatagttgatagatctatggggt |
387 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44560783 |
aaaactcgacaacatgatttttacgcctggtccttattatagcaatatttgatttttcccgcttaatatgcttatgctatagttgatagatctatggggt |
44560684 |
T |
|
| Q |
388 |
ttagttcttcacagaaaattactaatgtaatataggtattgtcatgatgatg |
439 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44560683 |
ttagttcttcacaggaaattactactgtaatataggtattgtcatgatgatg |
44560632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University