View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7005_high_2 (Length: 250)
Name: NF7005_high_2
Description: NF7005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7005_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 1907202 - 1906971
Alignment:
| Q |
8 |
gttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattaccttagcatt |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
1907202 |
gttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgcatt |
1907103 |
T |
|
| Q |
108 |
actacttcgact---tgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaataaactaaggtgtttcataaatataa |
204 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1907102 |
gctacttctactctttgcagctaacttttccatccttaattgcaatgataacaagaaaacaaataagtggactataaactaaggtgtttcataaatataa |
1907003 |
T |
|
| Q |
205 |
agctctgcaaaaaatgtagttttaaccaattt |
236 |
Q |
| |
|
||| |||| |||||||||||||||| |||||| |
|
|
| T |
1907002 |
agcactgcgaaaaatgtagttttaaacaattt |
1906971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 1892039 - 1891858
Alignment:
| Q |
8 |
gttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattaccttagcatt |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
1892039 |
gttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgcatt |
1891940 |
T |
|
| Q |
108 |
actacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaataaactaa |
186 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
1891939 |
gctacttctactctttgcagctaacttttccatccttaattgcaatgataacaagaaaacaaataagtggactataaactaa |
1891858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 1902969 - 1902788
Alignment:
| Q |
8 |
gttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattaccttagcatt |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
1902969 |
gttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgcatt |
1902870 |
T |
|
| Q |
108 |
actacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaataaactaa |
186 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
1902869 |
gctacttctactctttgcagctaacttttccatccttaattgcaatgataacaagaaaacaaataagtggactataaactaa |
1902788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 2 - 187
Target Start/End: Complemental strand, 1912867 - 1912679
Alignment:
| Q |
2 |
caattagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattacctt |
101 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1912867 |
caattggttgatgaagtgatgaggaattcatgatggattgtcctttgtagaaagtcaacacaaaagcacctgctattgatattatgcttccaattacctt |
1912768 |
T |
|
| Q |
102 |
agcattactacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaataaactaag |
187 |
Q |
| |
|
||||||||| |||| || ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||| |||||| |
|
|
| T |
1912767 |
agcattactgcttctactctttgcagctaacttttccattcttaattgcaatgataacaggaaaacaaataaggggacaatagactaag |
1912679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 1897475 - 1897281
Alignment:
| Q |
9 |
ttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattaccttagcatta |
108 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
1897475 |
ttgatgaagtgatgagaaattcatgatgggtggtcctttgtagaaagttaacacaaaagcacctgctattgatattatgcttcccattaccttggcatta |
1897376 |
T |
|
| Q |
109 |
ctacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaataaactaaggtgtttcataaat |
200 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||| ||| || |||||||||||| |
|
|
| T |
1897375 |
ctacttctactctttgcagctaacttttccatccttaattgcaatgataagaggaaacaaaataagtggacaatagactgagatgtttcataaat |
1897281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 1879684 - 1879509
Alignment:
| Q |
8 |
gttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattaccttagcatt |
107 |
Q |
| |
|
||||||||||| | || |||||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
1879684 |
gttgatgaagtaaagatgaattcatgatggatggtcctttgtagaaagtcaacacaaaagcacctgctattgagattatgcttccaattaccttagcatt |
1879585 |
T |
|
| Q |
108 |
actacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaata |
180 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
1879584 |
actacttctactctttgcagctaacttttccatccttaattgcaatgataagagcaaaacaaataagtggacaata |
1879509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 1886279 - 1886127
Alignment:
| Q |
1 |
ccaattagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattacct |
100 |
Q |
| |
|
|||||| |||||||||| |||||| ||| |||||| || ||||||||||| ||||||| ||||||||| ||| ||||||| |||||||| || | || || |
|
|
| T |
1886279 |
ccaattggttgatgaagagatgaggaatgcatgatggatggtcctttgtaaaaagtcaacacaaaagctcctactattgagattatgctccccagtatct |
1886180 |
T |
|
| Q |
101 |
tagcattactacttcgac---ttgcagctaacttttccatccttaattgcaat |
150 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||| |||| |
|
|
| T |
1886179 |
tagcattactacttctactctttgcagctaacttttccatccttaattacaat |
1886127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 27039553 - 27039637
Alignment:
| Q |
1 |
ccaattagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatatta |
85 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
27039553 |
ccaattggttgatgaagtgatgaggaattcatgatggatggtcctttgtagaaagtcaacacaaaagcacctgctattgagatta |
27039637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University