View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7005_low_3 (Length: 241)
Name: NF7005_low_3
Description: NF7005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7005_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38483510 - 38483286
Alignment:
| Q |
1 |
tccgcaagattttatttaaatcatttgccatatgatgaaaaatatagcaaatacattcaggaataaaacgtaaattcgcagactccccccaaatgagaag |
100 |
Q |
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| T |
38483510 |
tccgcaagattttatttaaatcatttgtcatatgatgaaaaatatagcaaatacattcaggaataaaacgtaaattcgcagattccccccaaataaggag |
38483411 |
T |
|
| Q |
101 |
ataaagagaaacatacagaatctcacgacgatgatcagagttattatttttaagatcaggaagcgagacacttgacttaacatgcaagtaactgcaccag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38483410 |
ataaagagaaacatacagaatctcacgacgatgatcagagttattatttttaagatcaggaagcgagacacttgacttaacatgcaagtaactgcaccag |
38483311 |
T |
|
| Q |
201 |
taagtgtaattacgtagaagattct |
225 |
Q |
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|||||||||||||||||||||||| |
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| T |
38483310 |
gaagtgtaattacgtagaagattct |
38483286 |
T |
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