View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7006_high_3 (Length: 377)
Name: NF7006_high_3
Description: NF7006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7006_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 40426773 - 40427126
Alignment:
| Q |
9 |
gagatgaaagagcaatgaatctctggctaagcttttcccttcgtcttctttcggccataacatgatcttgagcctgaatagggtttctatttacagcagc |
108 |
Q |
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| T |
40426773 |
gagatgaaagagaaatgaatctctggctaagcttttcccttcgtcttctttcggccataacatgatcttgagcctgaatagggtttctatttacagcaga |
40426872 |
T |
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| Q |
109 |
aaccttgttctctcgtttataataatcaccttgagaaatcacacttccaaaattcaagttttcaccatacccgatctcggttttaggcttcttaaccttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40426873 |
aaccttgttctctcgtttataataatcaccttgagaaatcacacttccaaaattcaagttttcaccatacccgatctcggttttaggcttcttaaccttt |
40426972 |
T |
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| Q |
209 |
gaatcattattcgagtaatcaaatgaaatgattttgggagaagccttgagtaatttagttggtggtgttgctgaggcaacagattgatctggactttgag |
308 |
Q |
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| T |
40426973 |
gaatcattattcgagtaatcaaatgaaatgattttgggagaagccttgagtagtttagttggtggtgttgctgaggcaacagattgatctggactttgag |
40427072 |
T |
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| Q |
309 |
tagggaaagaactgttctgtgtgctttcggaatggattcgcttgttgttgatgt |
362 |
Q |
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| T |
40427073 |
tagggaaagaactgttctgtgtgctttcggaatggattcgcttgttgttgatgt |
40427126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 362
Target Start/End: Original strand, 40441866 - 40442214
Alignment:
| Q |
14 |
gaaagagcaatgaatctctggctaagcttttcccttcgtcttctttcggccataacatgatcttgagcctgaatagggtttctatttacagcagcaacct |
113 |
Q |
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| T |
40441866 |
gaaagtgcaatgaatctctggctaagcttttcccttcgttttctttcggcgataacatgatctcgagcctgcatagggtttctatttacagcagaaacct |
40441965 |
T |
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| Q |
114 |
tgttctctcgtttataataatcaccttgagaaatcacacttccaaaattcaagttttcaccatacccgatctcggttttaggcttcttaacctttgaatc |
213 |
Q |
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| T |
40441966 |
tgttctctcgtttataataatcaccttgagaaatcacacttccaaaattcaagttttcaccatacccgatctcggttttaggcttcttaacctttgaatc |
40442065 |
T |
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| Q |
214 |
attattcgagtaatcaaatgaaatgattttgggagaagccttgagtaatttagttggtggtgttgctgaggcaacagattgatctggactttgagtaggg |
313 |
Q |
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| T |
40442066 |
attattcgagtaatcaaatgaaatgattttgggagaagccttgagtagtttagttggtggtgttgctgaggcaacagattgatctggactttgagtaggg |
40442165 |
T |
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| Q |
314 |
aaagaactgttctgtgtgctttcggaatggattcgcttgttgttgatgt |
362 |
Q |
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| T |
40442166 |
aaagaactgttctgtgtgctttcggaatggattcgcttgttgttgatgt |
40442214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 4947407 - 4947339
Alignment:
| Q |
13 |
tgaaagagcaatgaatctctggctaagcttttcccttcgtcttctttcggccataacatgatcttgagc |
81 |
Q |
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||||||||| ||||| || || ||||||||||||||||| ||||||||||||| ||||| ||| |||| |
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| T |
4947407 |
tgaaagagcgatgaaacttcgggtaagcttttcccttcgttttctttcggccattacatgttctcgagc |
4947339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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