View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7006_high_4 (Length: 336)
Name: NF7006_high_4
Description: NF7006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7006_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 33993494 - 33993769
Alignment:
| Q |
20 |
gtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttct |
119 |
Q |
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| T |
33993494 |
gtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttct |
33993593 |
T |
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| Q |
120 |
gtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataa |
219 |
Q |
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| T |
33993594 |
gtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataa |
33993693 |
T |
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| Q |
220 |
agctttatggtcttccaatgaggatcagagccatgatggaacaaggcatttaaatgttactttgtttggactatta |
295 |
Q |
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| T |
33993694 |
agctttatggtcttccaatgaggatcagagccatgatggaacaaggcatttaaatgttactttgtttggactatta |
33993769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 34000500 - 34000617
Alignment:
| Q |
24 |
gatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtga |
123 |
Q |
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| T |
34000500 |
gatcctcttcgtgagtcaatggatgcattcatggaaaagatctcagagattacaacaggttcagtgagtttgaaactgtataaaggcagtgcttctgtga |
34000599 |
T |
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| Q |
124 |
cgggtcggaagagtcctt |
141 |
Q |
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| T |
34000600 |
cgggtcggaagagtcctt |
34000617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 18852474 - 18852217
Alignment:
| Q |
20 |
gtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttct |
119 |
Q |
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||||||||||||||||||||| |||||| | || ||| ||||||| || |||| ||||||||||| |||| ||||||| | || |||||| || | || |
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| T |
18852474 |
gtttgatccacttcgcgaatccatggatgcctttatgcagaagattacagagaccacaacaggttctgtgactttgaaattatacaaaggttctgttact |
18852375 |
T |
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| Q |
120 |
gtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataa |
219 |
Q |
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| T |
18852374 |
gtaacaggtaggaagagcccctttagcctgtataggcaagatatctcatcatttgagaatagtgatatatatgatcaagctgatgctgctggttttatcc |
18852275 |
T |
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| Q |
220 |
agctttatggtcttccaatgaggatcagagccatgatggaacaaggcatttaaatgtt |
277 |
Q |
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| T |
18852274 |
ggctttacggtcttccaatgaaggtccgggcaatgcttgagcaaggcatttaagtgtt |
18852217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 42865585 - 42865369
Alignment:
| Q |
20 |
gtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttct |
119 |
Q |
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||||||||||||||| || |||||||| | || ||| ||||||| | ||| ||||||||||| || | ||||||| |||| |||||| || | || |
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| T |
42865585 |
gtttgatccacttcgtgagtcgatggacgcctttatgcagaagattactgcgaccacaacaggttccgttactttgaaattgtacaaaggttctgttact |
42865486 |
T |
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| Q |
120 |
gtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataa |
219 |
Q |
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|| | ||| ||||||||||| ||| | |||||| ||||||| || ||||||||| || | ||||||||| |||| |||||||||| ||| ||||| |
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| T |
42865485 |
gtagctggtatgaagagtccttttagcctgtataggcaagatatctcatcatttgagggtagtgagatatatgatcaagctgatgctgctggttttatcc |
42865386 |
T |
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| Q |
220 |
agctttatggtcttcca |
236 |
Q |
| |
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|||||| ||||||||| |
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| T |
42865385 |
ggctttacggtcttcca |
42865369 |
T |
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