View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7006_low_10 (Length: 227)
Name: NF7006_low_10
Description: NF7006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7006_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 23012340 - 23012192
Alignment:
| Q |
14 |
cctgtgttgacatcggtagggttttggcggcggtttcccatggttcgcttgggggtttgggtgggggcttctgtctcctcgcttctggccggtttcgggt |
113 |
Q |
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| T |
23012340 |
cctgtgttgacatcggtagggttttggcggcggtttcccatggttcgcttgggggtttgggtgggg-cttctgtctcctccctactggccggtttcgggt |
23012242 |
T |
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| Q |
114 |
gtgtttctttgttcctctgtttctgttccggtagccatctgtgccgggtg |
163 |
Q |
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| T |
23012241 |
gtgcttctttgttcctctgtttctgttccggtagccgtctgtgccgggtg |
23012192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 13297689 - 13297837
Alignment:
| Q |
14 |
cctgtgttgacatcggtagggttttggcggcggtttcccatggttcgcttgggggtttgggtgggggcttctgtctcctcgcttctggccggtttcgggt |
113 |
Q |
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| T |
13297689 |
cctgtatttacatcggtagggttttggtggcggtttcccttggttttcttgagtgtttgggtggggacttctgtctcct-acttttggctggtttcgggt |
13297787 |
T |
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| Q |
114 |
gtgtttctttgttcctctgtttctgttccggtagccatctgtgccgggtg |
163 |
Q |
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| T |
13297788 |
gtatttctttgttcttctgtttcggttctggtagctatctgtgccgggtg |
13297837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 9644476 - 9644552
Alignment:
| Q |
24 |
catcggtagggttttggcggcggtttcccatggttcgcttgggggtttgggtgggggcttctgtctcctcgcttctgg |
101 |
Q |
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| T |
9644476 |
catcggtagggttttggtggtggtttacctttgttc-ctaggggggttgggtgggggtttctgcctcctcccttctgg |
9644552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 21926724 - 21926792
Alignment:
| Q |
25 |
atcggtagggttttggcggcggtttcccatggttcgcttgggggtttgggtgggggcttctgtctcctc |
93 |
Q |
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|||| ||||||||||| || | ||| || |||||||||||||| || || |||||| |||||||||||| |
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| T |
21926724 |
atcgatagggttttggtggtgttttgccttggttcgcttggggattgggatgggggtttctgtctcctc |
21926792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 23176897 - 23176822
Alignment:
| Q |
18 |
tgttgacatcggtagggttttggcggcggtttcccatggttcgcttgggggtttgggtgggggcttctgtctcctc |
93 |
Q |
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| T |
23176897 |
tgttggcatcgatagggttttggtggcggtttgcctcggttcgcttgggggtttgggtgggggcttctgtatcctc |
23176822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 34213243 - 34213329
Alignment:
| Q |
14 |
cctgtgttgacatcggtagggttttggcggcggtttcccatggttcgcttgggggtttgggtgggggcttctgtctcctcgcttctg |
100 |
Q |
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||||||||| || || ||||||||||| || || || || ||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34213243 |
cctgtgttggcaccgatagggttttggtggtggctttccttggatcgcttgggggtttgggtgggggcttctgtctcctcccttctg |
34213329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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