View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7006_low_2 (Length: 409)
Name: NF7006_low_2
Description: NF7006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7006_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 43628680 - 43629059
Alignment:
| Q |
17 |
agaaactaatgacattctttattatacttactcagaaaaaacactaaatttgtatgaataatccaaattgttgctgtaaatttttaatattgtgtttatg |
116 |
Q |
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| T |
43628680 |
agaaactaatgacattctttattatacttactcagaaaaaacactaaatttgtatgagtaatccaaattgttgctgtaaatttttaatattgtgtttatg |
43628779 |
T |
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| Q |
117 |
tataatcgtagcacgtcactctcccaaataaaaccaaaaccaaagcaagtgaagtggttgtg-ttattggggtccatttaattacctacgtccatggcta |
215 |
Q |
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| T |
43628780 |
tataatcgtagcacgtcactctcccaaataaaaccaaaaccaaagcaagtgaagtggttgtgtttattggggtccatttaattacctacgtccatggcta |
43628879 |
T |
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| Q |
216 |
ttggccttgtccagataactttggataccaatgtttcattattttcaaagaagtttgaaactaaacacacacaaaagacctactggnnnnnnnnnnnnnn |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43628880 |
ttggccttgtccagataactttggataccaatgtttcattattttcaaagaagtttgaaactaaacacacacaagagacctactggaaaaaggaaaaaat |
43628979 |
T |
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| Q |
316 |
nnnngggccacgttataatattgtgggt-ggaaattgtgaacggatataggttttcacaatgactaattcatttgactat |
394 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43628980 |
aaaagggccacgttataatattgtgggtgggaaattgtgaacggatataggttttcacaatgactaattcatttgactat |
43629059 |
T |
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