View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7006_low_5 (Length: 280)

Name: NF7006_low_5
Description: NF7006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7006_low_5
NF7006_low_5
[»] chr2 (1 HSPs)
chr2 (1-278)||(18031233-18031506)
[»] chr4 (1 HSPs)
chr4 (1-131)||(55156505-55156640)
[»] chr3 (4 HSPs)
chr3 (1-131)||(29642063-29642197)
chr3 (2-52)||(4803977-4804027)
chr3 (2-49)||(10535703-10535750)
chr3 (135-169)||(48101527-48101561)
[»] chr8 (2 HSPs)
chr8 (1-58)||(32309433-32309490)
chr8 (138-275)||(32309130-32309266)
[»] chr6 (5 HSPs)
chr6 (1-58)||(33364663-33364720)
chr6 (138-275)||(33364360-33364496)
chr6 (135-170)||(22208490-22208525)
chr6 (135-177)||(16592721-16592763)
chr6 (137-187)||(33164133-33164183)
[»] chr1 (7 HSPs)
chr1 (1-58)||(30330170-30330227)
chr1 (138-275)||(30330394-30330530)
chr1 (2-49)||(25626139-25626186)
chr1 (135-169)||(9934245-9934279)
chr1 (137-187)||(24208117-24208167)
chr1 (137-187)||(45027897-45027947)
chr1 (137-187)||(45032745-45032795)
[»] chr7 (1 HSPs)
chr7 (153-278)||(22002144-22002269)
[»] scaffold0009 (1 HSPs)
scaffold0009 (2-49)||(89640-89687)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 18031233 - 18031506
Alignment:
Q  1 atcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaaacaatatgacaata-ttcttttcataatgtaaacataatgga 99  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| ||||||||    
T  18031233 atcacattaaaacacaatttaaaagagatataaaatgttttcaatgtgataacagaaaagaatatgacaatacttcttttcataatgtaaatataatgga 18031332  T
Q  100 atgagctttcagttttcttgtacccacacctctcatcattttggcatcatgctcttcatatggctacttatttgttaattattcttccaaccaaacaatt 199  Q
    |||||||| || ||||||||| |||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||||||||||     |||||||    
T  18031333 atgagcttccaattttcttgtccccacacctcacatctttttgacatcatgctcttcatatgactacttatttgttaattattcttcc-----aacaatt 18031427  T
Q  200 agctcttcaaacaccaaatacaattttttaaccaaaaatgtccctccaattctcaacttaaagtctttgggtgtctctg 278  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||  ||||||||||    
T  18031428 agctcttcaaacaccaaatacaatttttttaccaaaaacgtccctcctattctcaacttaaagtcttctggtgtctctg 18031506  T

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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 55156505 - 55156640
Alignment:
Q  1 atcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaaacaatatgacaata-ttcttttcataa----tgtaaacataa 95  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| ||||||  ||||    |||||||| ||    
T  55156505 atcacattaaaacacaatttgaaagagatataaaatgttttcaatgtgataacggaaaagaatatgacaatacttctttctataatttctgtaaacaaaa 55156604  T
Q  96 tggaatgagctttcagttttcttgtacccacacctc 131  Q
    ||||||||||||   |||||||||| | ||||||||    
T  55156605 tggaatgagcttctggttttcttgtcctcacacctc 55156640  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 29642063 - 29642197
Alignment:
Q  1 atcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaaacaatatgacaa-tattcttttcataa----tgtaaacataa 95  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||||||| | |||||| |||||    |||||||| ||    
T  29642063 atcacattaaaacacaatttaaaagagatatacaatgttttcaatgtgataacggaaaataatatgacaattcttctttccataatctttgtaaacaaaa 29642162  T
Q  96 tggaatgagctttcagttttcttgtacccacacctc 131  Q
    ||||| |||||| |||||||||||| | ||||||||    
T  29642163 tggaa-gagcttccagttttcttgtcctcacacctc 29642197  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 4804027 - 4803977
Alignment:
Q  2 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataa 52  Q
    |||||||||||||||||||||| | || ||||||||||||||| |||||||    
T  4804027 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtgataa 4803977  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 10535750 - 10535703
Alignment:
Q  2 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 49  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  10535750 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 10535703  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 48101561 - 48101527
Alignment:
Q  135 tcattttggcatcatgctcttcatatggctactta 169  Q
    ||||||||||||||||||||||| |||||||||||    
T  48101561 tcattttggcatcatgctcttcaaatggctactta 48101527  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 32309490 - 32309433
Alignment:
Q  1 atcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 58  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  32309490 atcacattaaaacacaatttgaaagagatattaaatgttttcaatgtgataacggaaa 32309433  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 275
Target Start/End: Complemental strand, 32309266 - 32309130
Alignment:
Q  138 ttttggcatcatgctcttcatatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 237  Q
    ||||||||||| || ||||| |||||||||||| | ||||  || || || |||||  || ||||||||||||||||||  |||||| | || |||||||    
T  32309266 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctcta-ccaaaaa 32309168  T
Q  238 tgtccctccaattctcaacttaaagtctttgggtgtct 275  Q
    | ||| ||| | ||||| |||||||||||||| |||||    
T  32309167 tctccatcctactctcatcttaaagtctttggatgtct 32309130  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 33364720 - 33364663
Alignment:
Q  1 atcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 58  Q
    |||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||    
T  33364720 atcacattaaaacacaatttgaaaaagatattaaatgttttcaatgtgataacggaaa 33364663  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 275
Target Start/End: Complemental strand, 33364496 - 33364360
Alignment:
Q  138 ttttggcatcatgctcttcatatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 237  Q
    ||||||||||| || ||||| |||||||||||| | ||||  || || || |||||  || ||||||||||||||||||  |||||| | || |||||||    
T  33364496 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctcta-ccaaaaa 33364398  T
Q  238 tgtccctccaattctcaacttaaagtctttgggtgtct 275  Q
    | ||| ||| | ||||| |||||||||||||| |||||    
T  33364397 tctccatcctactctcatcttaaagtctttggttgtct 33364360  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 22208525 - 22208490
Alignment:
Q  135 tcattttggcatcatgctcttcatatggctacttat 170  Q
    ||||||||||||||||||||||| ||||||||||||    
T  22208525 tcattttggcatcatgctcttcaaatggctacttat 22208490  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 16592721 - 16592763
Alignment:
Q  135 tcattttggcatcatgctcttcatatggctacttatttgttaa 177  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||    
T  16592721 tcattttggcatcatgctcttcacatggcaacttatatgttaa 16592763  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 33164133 - 33164183
Alignment:
Q  137 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 187  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  33164133 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 33164183  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30330170 - 30330227
Alignment:
Q  1 atcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 58  Q
    |||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||    
T  30330170 atcacattaaaacacaatttgaaaaagatattaaatgttttcaatgtgataacggaaa 30330227  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 275
Target Start/End: Original strand, 30330394 - 30330530
Alignment:
Q  138 ttttggcatcatgctcttcatatggctacttatttgttaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 237  Q
    ||||||||||| || ||||| |||||||||||| | ||||  || || || |||||  || ||||||||||||||||||  |||||| | || |||||||    
T  30330394 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctcta-ccaaaaa 30330492  T
Q  238 tgtccctccaattctcaacttaaagtctttgggtgtct 275  Q
    | ||| ||| | ||||| |||||||||||||| |||||    
T  30330493 tctccatcctactctcatcttaaagtctttggctgtct 30330530  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 25626186 - 25626139
Alignment:
Q  2 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 49  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  25626186 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 25626139  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 9934279 - 9934245
Alignment:
Q  135 tcattttggcatcatgctcttcatatggctactta 169  Q
    ||||||||||||||||||||||| |||||||||||    
T  9934279 tcattttggcatcatgctcttcaaatggctactta 9934245  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 24208117 - 24208167
Alignment:
Q  137 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 187  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  24208117 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 24208167  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 45027897 - 45027947
Alignment:
Q  137 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 187  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  45027897 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 45027947  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 45032745 - 45032795
Alignment:
Q  137 attttggcatcatgctcttcatatggctacttatttgttaattattcttcc 187  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||    
T  45032745 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 45032795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 278
Target Start/End: Complemental strand, 22002269 - 22002144
Alignment:
Q  153 cttcatatggctacttatttgttaattattcttccaaccaa-acaattagctcttcaaacaccaaatacaattttttaaccaaaaatgtccctccaattc 251  Q
    ||||||||| | ||||||||||||| ||||||||||||||| | || |||||||| |||| |||| ||| |||  ||| | ||| || | ||||| ||||    
T  22002269 cttcatatgaccacttatttgttaaatattcttccaaccaacataagtagctcttaaaaccccaactacgattccttatcaaaatat-ttcctcctattc 22002171  T
Q  252 tcaacttaaagtctttgggtgtctctg 278  Q
    ||| ||||||||| | |||||||||||    
T  22002170 tcatcttaaagtcatcgggtgtctctg 22002144  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 89640 - 89687
Alignment:
Q  2 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 49  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  89640 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 89687  T

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