View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7006_low_7 (Length: 250)
Name: NF7006_low_7
Description: NF7006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7006_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 4774084 - 4774303
Alignment:
| Q |
18 |
agattcattatcttgaatgtgttgggcagaactaatcatacgcctctagcagcagcagtatgagactgagtgctaaagaaacattgagaaggacccgtag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4774084 |
agattcattatcttgaatgtgttgggcagaactgatcatacgcctctagcagcagcagtatgagactgagtgctaaagaaacattgagaaggacccgtag |
4774183 |
T |
|
| Q |
118 |
ttcctacgaaacatatacctaatcttacgtcgtactgtttttctccttttgtacgtggaagatcttcatttgattgtgctggattaagaaattgtgatta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4774184 |
ttcctacgaaacatatacctaatcttacgtcgtactgtttttctccttttgtacgtggaagatcttcatttgattgtgctggattaagaaattgtgatta |
4774283 |
T |
|
| Q |
218 |
attcctaaacttgcataata |
237 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
4774284 |
attcctaaaattgcataata |
4774303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University