View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7007_high_1 (Length: 521)

Name: NF7007_high_1
Description: NF7007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7007_high_1
NF7007_high_1
[»] chr8 (1 HSPs)
chr8 (37-494)||(41294449-41294906)
[»] chr3 (2 HSPs)
chr3 (353-494)||(7755507-7755648)
chr3 (378-494)||(4086182-4086298)
[»] chr5 (2 HSPs)
chr5 (353-451)||(26153224-26153320)
chr5 (266-333)||(10049287-10049354)
[»] chr2 (3 HSPs)
chr2 (373-454)||(2210353-2210435)
chr2 (259-335)||(29712410-29712484)
chr2 (281-353)||(6766463-6766535)
[»] chr4 (3 HSPs)
chr4 (353-494)||(43470872-43471012)
chr4 (266-321)||(41319455-41319510)
chr4 (269-348)||(41463900-41463978)
[»] chr1 (2 HSPs)
chr1 (266-349)||(19038947-19039030)
chr1 (269-349)||(32153052-32153132)
[»] chr7 (2 HSPs)
chr7 (269-341)||(31542260-31542332)
chr7 (302-349)||(28904860-28904907)


Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 37 - 494
Target Start/End: Complemental strand, 41294906 - 41294449
Alignment:
Q  37 aatttaatagcacttctaatttgagagtttaatcttttggttacagttaacacaaagtttaatggtataccttcagaaaaagttttatgtgtttccaact 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41294906 aatttaatagcacttctaatttgagagtttaatcttttggttacagttaacacaaagtttaatggtataccttcagaaaaagttttatgtgtttccaact 41294807  T
Q  137 atatatgtttcaatgcttgtgatttatatatggactaacactgaacttactataacgcagttaagatggaatcattatctaaattagctttatcccggcg 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41294806 atatatgtttcaatgcttgtgatttatatatggactaacactgaacttactataacgcagttgagatggaatcattatctaaattagctttatcccggcg 41294707  T
Q  237 ttccgaaaactagatgagtatttaagggaaggggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattat 336  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41294706 ttccgaaaactagatgagtatttaagggaaggggattttctccggtgtgtttctctcaagttttctgcagtgtgggaatctacaccattaaatttattat 41294607  T
Q  337 atctcataatttctaagaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaag 436  Q
    |||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41294606 atctcataatttttaggaaaatgcttgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaacccaacaag 41294507  T
Q  437 ctagattaaatttctataaagaatataggagtaactaccatctgccaacacttctcag 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41294506 ctagattaaatttctataaagaatataggagtaactaccatctgccaacatttctcag 41294449  T

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Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 353 - 494
Target Start/End: Original strand, 7755507 - 7755648
Alignment:
Q  353 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttcta 452  Q
    ||||||| || |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  7755507 gaaaatgcttaatgttacgagacacggtattgtacgaatttatacgaatagtaactattcattttatttttaaaacccaacaagctagattaaatttcta 7755606  T
Q  453 taaagaatataggagtaactaccatctgccaacacttctcag 494  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  7755607 taaagtatataggagtaactaccatctgccaacacttctcag 7755648  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 378 - 494
Target Start/End: Original strand, 4086182 - 4086298
Alignment:
Q  378 agtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttctataaagaatataggagtaactaccat 477  Q
    |||||||||  |||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||| || |||||| |||||    
T  4086182 agtcttgcataaatttagacgaatggtaattattcattttattttcaaaacccaacaagctagattaaatttctatagagtatacagcagtaaccaccat 4086281  T
Q  478 ctgccaacacttctcag 494  Q
    |||||||||||||||||    
T  4086282 ctgccaacacttctcag 4086298  T

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Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 353 - 451
Target Start/End: Original strand, 26153224 - 26153320
Alignment:
Q  353 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttct 451  Q
    ||||||| || |||||||||  |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26153224 gaaaatgcttaatgttacga--cacaatcttgcacgaatttagacgaatggtaactattcattttattttcaaaatccaacaagctagattaaatttct 26153320  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 333
Target Start/End: Original strand, 10049287 - 10049354
Alignment:
Q  266 aggggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttat 333  Q
    |||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  10049287 agggaatttcctccggtgtgtttttctcctgttttttgcagtgtgggaatctacaccattaaatttat 10049354  T

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Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 373 - 454
Target Start/End: Complemental strand, 2210435 - 2210353
Alignment:
Q  373 gacacagtcttgcacgaatttatacgaatag-taactattcattttattttcaaaatccaacaagctagattaaatttctata 454  Q
    |||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2210435 gacatagtcttgcacgaatttagacgaatgggtaactattcattttattttcaaaatccaacaagctagattaaatttctata 2210353  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 259 - 335
Target Start/End: Original strand, 29712410 - 29712484
Alignment:
Q  259 taagggaaggggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttatta 335  Q
    |||||| |||||||||| |||||||| ||||||  | |||||||| |||||||||||||||||||||||||||||||    
T  29712410 taaggggaggggatttcttccggtgtttttctc--ctgttttctgtagtgtgggaatctacaccattaaatttatta 29712484  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 6766463 - 6766535
Alignment:
Q  281 gtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttctaag 353  Q
    |||||||| ||||| ||||||| | |||||  ||||||||||| ||||  |||||| ||||||||||| ||||    
T  6766463 gtgtgtttttctcctgttttctactgtgtgaaaatctacaccaataaacatattatctctcataatttttaag 6766535  T

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Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 353 - 494
Target Start/End: Complemental strand, 43471012 - 43470872
Alignment:
Q  353 gaaaatgattgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaatccaacaagctagattaaatttcta 452  Q
    ||||||| || |||||||||  || |||||||||| |||||| |||||| || |||||| |||||||||  ||||  || ||||||||||||||||||||    
T  43471012 gaaaatgcttaatgttacga--cagagtcttgcacaaatttagacgaatggtgactatttattttatttgtaaaacacagcaagctagattaaatttcta 43470915  T
Q  453 taaagaata-taggagtaactaccatctgccaacacttctcag 494  Q
    ||||| |||  || |||||| ||||||||||||||||||||||    
T  43470914 taaagtatacaagtagtaaccaccatctgccaacacttctcag 43470872  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 41319510 - 41319455
Alignment:
Q  266 aggggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacac 321  Q
    |||||||||||||| |||||||| ||||| ||||| |||||||| | |||||||||    
T  41319510 aggggatttcctcccgtgtgtttttctcctgttttatgcagtgtagaaatctacac 41319455  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 41463900 - 41463978
Alignment:
Q  269 ggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataattt 348  Q
    |||| |||||| |||||||| ||| |  ||||||||||||| | ||||||||||||||||| |||||| |||| ||||||    
T  41463900 ggatctcctcccgtgtgtttttcttcgattttctgcagtgtag-aatctacaccattaaatatattatctctcttaattt 41463978  T

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Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 19038947 - 19039030
Alignment:
Q  266 aggggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttc 349  Q
    |||||||||||||| |||||||| ||||  ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  19038947 aggggatttcctccagtgtgtttttctcttgttttctgcggtgtgggaatctacaacattaaatttattatctctcataatttc 19039030  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 32153132 - 32153052
Alignment:
Q  269 ggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctcataatttc 349  Q
    |||||| |||| |||||||| |||||  ||||| ||| |||||||||||| ||||||||||| ||||| |||| |||||||    
T  32153132 ggatttgctccagtgtgtttttctcctattttccgcaatgtgggaatctaaaccattaaattcattatctctcctaatttc 32153052  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 31542332 - 31542260
Alignment:
Q  269 ggatttcctccggtgtgtttctctccagttttctgcagtgtgggaatctacaccattaaatttattatatctc 341  Q
    |||| |||||| |||||||| ||||||||||||| |||||||| |||||||||||| |||| |||||| ||||    
T  31542332 ggatctcctcctgtgtgtttttctccagttttctccagtgtggaaatctacaccatcaaatgtattatctctc 31542260  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 28904907 - 28904860
Alignment:
Q  302 tgcagtgtgggaatctacaccattaaatttattatatctcataatttc 349  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||    
T  28904907 tgcagtgtgggaatctacaccattaaatttattatctctcttaatttc 28904860  T

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