View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7007_low_10 (Length: 264)
Name: NF7007_low_10
Description: NF7007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7007_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 43001917 - 43002168
Alignment:
| Q |
1 |
cttcattgtatatgatgaaggttttcgagtgacatatctaaccaaaacaaattaggctaatgcaaagaagaaaatcttttatgaaatatgtaacatttga |
100 |
Q |
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| T |
43001917 |
cttcattgtatatgatgaaggttttcgagtgacatatctaaccaaaacaaattaggctaatgcaaagaagaaaatcttttatgaaatatgtaacatttga |
43002016 |
T |
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| Q |
101 |
tatcattagtaatat--attaaattcccctaaaaaataatacattaaatgctggggtaatattcattttggtcagtgaatgtgtaacagtgtctggtgta |
198 |
Q |
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| T |
43002017 |
tatcattagtaatatatattaaattcccctaaaaaataatacattaaatgctggggtaatattcattttggtcactgaatgtgtaacggtgtctggtgta |
43002116 |
T |
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| Q |
199 |
ggtgtggaacatgttggtggagacatgtttgtgagtgttccaaaagctgatg |
250 |
Q |
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| T |
43002117 |
ggtgtggaacatgttggtggagacatgtttgtgagtgttccaaaagctgatg |
43002168 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 42474039 - 42473983
Alignment:
| Q |
194 |
gtgtaggtgtggaacatgttggtggagacatgtttgtgagtgttccaaaagctgatg |
250 |
Q |
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| T |
42474039 |
gtgtaggagttgagcatgttggtggagacatgtttgtcagtattccaaaggctgatg |
42473983 |
T |
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