View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7007_low_2 (Length: 509)
Name: NF7007_low_2
Description: NF7007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7007_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 35072127 - 35071611
Alignment:
| Q |
1 |
ttcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttcagataacaggagagaggagcatggagagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072127 |
ttcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttcagataacaggagagaggagcatggagagac |
35072028 |
T |
|
| Q |
101 |
aagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttccagctaactgtaaattggatcaggttaaggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072027 |
aagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttccagctaactgtaaattggatcaggttaaggc |
35071928 |
T |
|
| Q |
201 |
ttctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagtgagagtaattatga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35071927 |
ttctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagtgagagtaataatga |
35071828 |
T |
|
| Q |
301 |
aaag---------------ttgaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgattaggaaatgctgttacaaataag |
385 |
Q |
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| T |
35071827 |
acagttctgttcgtgtggattgaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgattaggaaatgctgttacaaataag |
35071728 |
T |
|
| Q |
386 |
aaacgtgtgtgtatcataagcattaatacgggttagataaagcacctacgtgttgatgtccaccacacatgtgattctacggaattatgttatttttcaa |
485 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071727 |
aaacgtgtgtgtatcataagcattaatacgagttagataaagcacctacgtgttgatgtccaccacacatgtgattctacggaattatgttatttttcaa |
35071628 |
T |
|
| Q |
486 |
ttattattgatgtccat |
502 |
Q |
| |
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|||||||| |||||||| |
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| T |
35071627 |
ttattattaatgtccat |
35071611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 35072967 - 35072805
Alignment:
| Q |
1 |
ttcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttcagataacaggagagaggagcatggagagac |
100 |
Q |
| |
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||||| |||||| | || || ||||| || ||||||||||| ||||| ||||||||| || || |||||||||| || ||||||| ||| || | | |
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| T |
35072967 |
ttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacattgaaaaag |
35072868 |
T |
|
| Q |
101 |
aagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
163 |
Q |
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|||||| |||||| ||| || ||||| |||||||| ||||| |||||||||||||| |||| |
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| T |
35072867 |
aagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
35072805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 35106893 - 35107055
Alignment:
| Q |
1 |
ttcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttcagataacaggagagaggagcatggagagac |
100 |
Q |
| |
|
||||| |||||| | || || ||||| || ||||||||||| ||||| ||||||||| || || |||||||||| || ||||||| | | || | | |
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| T |
35106893 |
ttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaactttgaaaaag |
35106992 |
T |
|
| Q |
101 |
aagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
163 |
Q |
| |
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|||||| |||||| ||| || ||||| |||||||| ||||| |||||||||||||| |||| |
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|
| T |
35106993 |
aagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
35107055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 34919170 - 34919235
Alignment:
| Q |
180 |
taaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaaga |
245 |
Q |
| |
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|||| ||||||||||||| ||| ||| || |||| ||||||||||||||||| ||||||||||| |
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| T |
34919170 |
taaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga |
34919235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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