View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7007_low_3 (Length: 461)
Name: NF7007_low_3
Description: NF7007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7007_low_3 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold1079 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 16899214 - 16898754
Alignment:
| Q |
1 |
tggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899214 |
tggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaa |
16899115 |
T |
|
| Q |
101 |
gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagatatattttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899114 |
gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagatatattttac |
16899015 |
T |
|
| Q |
201 |
accccagaggggctataattggagataccattgtttatggtacagaagttcctataaaaatgggaaatgccctacctttgagtgcggtttgaactattga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899014 |
accccagaggggctataattggagataccattgtttatggtacagaagttcctataaaaatgggaaatgccctacctttgagtgcggtttgaactattga |
16898915 |
T |
|
| Q |
301 |
tttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16898914 |
tttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaa |
16898815 |
T |
|
| Q |
401 |
ctgaagagtaacgacagcaagtgattgagttcagtactttctcatataaaattattgaccc |
461 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16898814 |
ctgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccc |
16898754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 18347729 - 18347269
Alignment:
| Q |
1 |
tggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347729 |
tggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaa |
18347630 |
T |
|
| Q |
101 |
gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagatatattttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347629 |
gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagatatattttac |
18347530 |
T |
|
| Q |
201 |
accccagaggggctataattggagataccattgtttatggtacagaagttcctataaaaatgggaaatgccctacctttgagtgcggtttgaactattga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347529 |
accccagaggggctataattggagataccattgtttatggtacagaagttcctataaaaatgggaaatgccctacctttgagtgcggtttgaactattga |
18347430 |
T |
|
| Q |
301 |
tttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347429 |
tttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaa |
18347330 |
T |
|
| Q |
401 |
ctgaagagtaacgacagcaagtgattgagttcagtactttctcatataaaattattgaccc |
461 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
18347329 |
ctgaagagtaacggcagcaagtgattgagttcggtagtttctcatataaaattattgaccc |
18347269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 51701232 - 51701101
Alignment:
| Q |
35 |
gcagggcatagaggggg-aggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcga---- |
129 |
Q |
| |
|
||||||||||||||||| || ||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||| || |||||||| ||| |
|
|
| T |
51701232 |
gcagggcatagaggggggagatcataagtgtctatactgtaaaattgattttcgtaagaatgaaatagacatatatggtcaaaacgtaactaacgaatat |
51701133 |
T |
|
| Q |
130 |
atacgaccctaatagaaatgcacacatttgtc |
161 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
51701132 |
atacgaccctaattgaaatgcacacatttgtc |
51701101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 51701422 - 51701385
Alignment:
| Q |
4 |
taaaggccgtaatgccagaggaatcattaccgcagggc |
41 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51701422 |
taaaggccgtaatgccagaggaatctttaccgcagggc |
51701385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 13236762 - 13237222
Alignment:
| Q |
1 |
tggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236762 |
tggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaa |
13236861 |
T |
|
| Q |
101 |
gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagatatattttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236862 |
gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagatatattttac |
13236961 |
T |
|
| Q |
201 |
accccagaggggctataattggagataccattgtttatggtacagaagttcctataaaaatgggaaatgccctacctttgagtgcggtttgaactattga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236962 |
accccagaggggctataattggagataccattgtttatggtacagaagttcctataaaaatgggaaatgccctacctttgagtgcggtttgaactattga |
13237061 |
T |
|
| Q |
301 |
tttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13237062 |
tttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaa |
13237161 |
T |
|
| Q |
401 |
ctgaagagtaacgacagcaagtgattgagttcagtactttctcatataaaattattgaccc |
461 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
13237162 |
ctgaagagtaacggcagcaagtgattgagttcggtagtttctcatataaaattattgaccc |
13237222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 312 - 461
Target Start/End: Original strand, 41641583 - 41641732
Alignment:
| Q |
312 |
ggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaactgaagagtaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41641583 |
ggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaactgaagagtaa |
41641682 |
T |
|
| Q |
412 |
cgacagcaagtgattgagttcagtactttctcatataaaattattgaccc |
461 |
Q |
| |
|
|| |||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
41641683 |
cggcagcaagtgattgagttcggtagtttctcatataaaattattgaccc |
41641732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 198280 - 198738
Alignment:
| Q |
1 |
tggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaa |
100 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||| |
|
|
| T |
198280 |
tggtaaaggtcgtaattccagaggaatcattaccgcatggcatagagggggaggtcataagcgcctataccgtaaaatagattttcgacggaatcaaaaa |
198379 |
T |
|
| Q |
101 |
gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagatatattttac |
200 |
Q |
| |
|
||||||| |||| |||||||||| || ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
198380 |
gacatatctggtagaatcgtaaccatagaatacgaccctaatcgaaatgcatacatttgtctcatacactatggggatggtgagaagagatatattttac |
198479 |
T |
|
| Q |
201 |
accccagaggggctataattggagataccattgtttatggtacagaagttcctataaaaatgggaaatgccctacctttgagtgcggtttgaactattga |
300 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
198480 |
atcccagaggggctataattggagatactattgtttctggtacaaaagttcctatatcaatgggaaatgccctacctttgagtgcggtttgaactattga |
198579 |
T |
|
| Q |
301 |
tttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
198580 |
tttacgtaattggaagtaaccaattaggtttacgacgaaacctagaaatcgatcactgatccaatttgactacctctacgggatagacctcaacagaaaa |
198679 |
T |
|
| Q |
401 |
ctgaagagtaacgacagcaagtgattgagttcagtactttctcatataaaattattgac |
459 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||| || |||||| |||||||||||| |
|
|
| T |
198680 |
ctgttgagtaacggcagcaagtgattgagttcagtagttcctcatagaaaattattgac |
198738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 371 - 459
Target Start/End: Complemental strand, 282366 - 282278
Alignment:
| Q |
371 |
tacctctacaggatagacttcaacagaaaactgaagagtaacgacagcaagtgattgagttcagtactttctcatataaaattattgac |
459 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||| || |||||| |||||||||||| |
|
|
| T |
282366 |
tacctctacgggatagacctcaacagaaaactgttgagtaacggcagcaagtgattgagttcagtagttcctcatagaaaattattgac |
282278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 101 - 340
Target Start/End: Complemental strand, 33420594 - 33420354
Alignment:
| Q |
101 |
gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaaaagatatattttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33420594 |
gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttatctcatacactatggggatggtgagaaaagatatattttac |
33420495 |
T |
|
| Q |
201 |
accccagaggggctataattggagataccattgtttatggtacagaagttcctataaaaatgggaaatgccctacctttgagtgcggtttgaactattga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33420494 |
accccagaggggctataattggagataccattgtttatggtacagaagttcctataaaaatgggaaatgccctacctttgagtgcggtttgaactattga |
33420395 |
T |
|
| Q |
301 |
ttta-cgtaattggaagtaaccaattaggtttacggcgaaa |
340 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33420394 |
tttatcgtaattggaagtaaccaattagatttacggcgaaa |
33420354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 208 - 461
Target Start/End: Original strand, 33064637 - 33064889
Alignment:
| Q |
208 |
aggggctataattggagataccattgtttatggtacagaagttcctataaaaatgggaaatgccctacctttgagtgcggtttgaactattgatttacgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| || |
|
|
| T |
33064637 |
aggggctataattggagataccattgtttatggtacaaaagttcctataaaa-tgggaaatgccctacctttgagtgtgatttgaactattgatttatgt |
33064735 |
T |
|
| Q |
308 |
aattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaactgaaga |
407 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
33064736 |
aattggaagtaaccaattaagattacggcgaaatctatcaatcgatcacggatccaatttgagtacctctaccggatagacttcaacagaaaactaaaga |
33064835 |
T |
|
| Q |
408 |
gtaacgacagcaagtgattgagttcagtactttctcatataaaattattgaccc |
461 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||| || ||||||| |
|
|
| T |
33064836 |
gtaacgacaataagtgattgagttcagtagtttctcatataaattttttgaccc |
33064889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 26345819 - 26345889
Alignment:
| Q |
82 |
ttttcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcac |
152 |
Q |
| |
|
||||||||| ||| ||||||||||||||| | |||||||||||| ||| || |||||||| ||||||||| |
|
|
| T |
26345819 |
ttttcgacggaataaaaaagacatatatgattgaatcgtaactagtgaaaacaaccctaatcgaaatgcac |
26345889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 186 - 1
Alignment:
| Q |
1 |
tggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaa |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
186 |
tggtaaaggtcgtaatgccagaggaatcattaccgcaaggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgaaatgaaaaa |
87 |
T |
|
| Q |
101 |
gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgagaa |
186 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
86 |
gacatatatggtagaatcgtaaccatagaatacgaccctaatcgaaatgcatacatttgtctcatacactatggggatggtgagaa |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 23053468 - 23053585
Alignment:
| Q |
1 |
tggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
23053468 |
tggtaaaggctgtaatgccagaggaatcgttaccacagggcatagagggagaggtcataagcgtctataccgtaaaattgattttctacggaatgaaaaa |
23053567 |
T |
|
| Q |
101 |
gacatatatggtcgaatc |
118 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
23053568 |
gacatatatagtcgaatc |
23053585 |
T |
|
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