View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7007_low_4 (Length: 434)
Name: NF7007_low_4
Description: NF7007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7007_low_4 |
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| [»] scaffold1920 (1 HSPs) |
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Alignment Details
Target: scaffold1920 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: scaffold1920
Description:
Target: scaffold1920; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 423 - 1
Alignment:
| Q |
1 |
atttgaaaaagtttagtttctaaatttaataagatgtgtcagtaataggtcggacaaacaaaagtctcaaacaccaacatatacctttgataaaaaatgt |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
423 |
atttgaaaaaatttagtttctaaatttaataagatgtgtcggtaataggtcggataaacaaaagtctcaaacaccaacatatacctttgataaaaaaagt |
324 |
T |
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| Q |
101 |
tgacaccgataataatttaaaagattatttctaataacatttgtcaataatgtgttgaacaccaaccgaactttgataagaggtgtcaacattgacatgt |
200 |
Q |
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| T |
323 |
tgacaccgataatcatttaaaagactatttctaataacatttgtcaataatgtgttgaacaccaaccgaactttgataagaggtgtcaacattgacatgt |
224 |
T |
|
| Q |
201 |
catcatgtcaacaccgatagtaatttaagnnnnnnnttataatataaacataataacatgtttgagtattatgtcagacacaaagacgtatcaaacaaca |
300 |
Q |
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| T |
223 |
catcatgtcaacaccgatagtaatttaagaaaaaaattataatctaaacatgataacatgtgtgagtattatgtcagacacaaagacgtatcgaacatca |
124 |
T |
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| Q |
301 |
acatttctataatcagacgtgtcgatattatcatatcaatgccgataataatttgaaaaaattaattctctagaacttgtgtcacacgtgtcgaacaccg |
400 |
Q |
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| T |
123 |
acatttctataatcagacgtgtcgatattgtcatatcaatgccgataataatttgaaaaaattaattctctagaacttgtgtcacacgtgtcgaacaccg |
24 |
T |
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| Q |
401 |
atacaccttttgtttagcaacac |
423 |
Q |
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| T |
23 |
atacaccttttgttgagcaacac |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 15359981 - 15360409
Alignment:
| Q |
1 |
atttgaaaaagtttagtttctaaatttaataagatgtgtcagtaataggtcggacaaacaaaagtctcaaacaccaacatatacctttgataaaaaatgt |
100 |
Q |
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| T |
15359981 |
atttgaaaaaatttagtttctaaatttaataagatgtgtcggtaataggtcggacaaacacaagtctcaaacaccaacatatacctttgataaaaaaaat |
15360080 |
T |
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| Q |
101 |
tgacaccgataataatttaaaagattatttctaataacatttgtcaataatgtgttgaacaccaaccgaactttgataagaggtgtcaacattgacatgt |
200 |
Q |
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| T |
15360081 |
taacaccgataataatttaaaagactatttctaataacatgtgtcaataatgtgttgaacaccaaccgaactttgataagaggtgtcaacattgacatgt |
15360180 |
T |
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| Q |
201 |
catcatgtcaacaccgatagtaatttaag--nnnnnnnttataatataaacataataacatgtttgagtattatgtcagacacaaagacgtatcaaacaa |
298 |
Q |
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| T |
15360181 |
catcatgtcaacaccgatagtaatttaagaaaaaaaaattatgatctaaacatgataacatttgtgagtattatgtcagacacaaggacgtatcgaacaa |
15360280 |
T |
|
| Q |
299 |
caacatttctataatcagacgtgtcgatattatcatatcaatgccgataataatttgaaaaaattaattctctagaacttgtgtcacacgtgtcgaacac |
398 |
Q |
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| T |
15360281 |
caacatttctataatcagacgtgtcgacattgtcatagcaatgccgataaaaatttgaaaaaattaactctctagaacttttttcacacgtgtcgaacac |
15360380 |
T |
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| Q |
399 |
cgatacaccttttgtttagcaacaccaaa |
427 |
Q |
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| T |
15360381 |
cgatacaccttttattgagcaacaccaaa |
15360409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 108 - 354
Target Start/End: Original strand, 15358889 - 15359135
Alignment:
| Q |
108 |
gataataatttaaaagattatttctaataacatttgtcaataatgtgttgaacaccaaccgaactttgataagaggtgtcaacattgacatgtcatcatg |
207 |
Q |
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| T |
15358889 |
gataataatttaaaagactgtttgtaataacaagtgtcaataatctgttgaacaccaatcgacctttgataagagatgtcaaccttgacatgtcatcatg |
15358988 |
T |
|
| Q |
208 |
tcaacaccgatagtaatttaagnnnnnnnttataatataaacataataacatgtttgagtattatgtcagacacaaagacgtatcaaacaacaacatttc |
307 |
Q |
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| T |
15358989 |
tcaacatcgataataatttaagaaaaaaattataatctaaacatgataacatgtgtcagtattatgtcagacacaaagatgtatcgaacaacaacatttc |
15359088 |
T |
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| Q |
308 |
tataatcagacgtgtcgatattatcatatcaatgccgataataattt |
354 |
Q |
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| T |
15359089 |
tttgatcagacgtgtcgatattctcatatcaatgccaataataattt |
15359135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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