View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7007_low_8 (Length: 280)
Name: NF7007_low_8
Description: NF7007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7007_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 22812950 - 22813201
Alignment:
| Q |
24 |
tattgggaggaggaggaggtattggtttaagtttggtatggattgaagatgatagggtttctggtaaattaatagacgattgcatggaaaagatagaggt |
123 |
Q |
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| T |
22812950 |
tattgggagggggaggaggtattggtttaagtttggtatggattgaagatgatagggtttctggtaaattaatagacaattgaatggcgaagataaatgt |
22813049 |
T |
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| Q |
124 |
ttggtatggattgaagatgaaagttcaatgttagctttcatgaagattgcacgtgcctgccaatttttccttga-------nnnnnnnnnnnnattctgc |
216 |
Q |
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| T |
22813050 |
ttggtatggattgaagatgaaagttcaatgttacctttcatgaagattgcacgtgcctgtcaattttttcttgatttttttctttttttttttattctgc |
22813149 |
T |
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| Q |
217 |
aattacacgcgtggacattactctcctttttaattaaaataattacacaggt |
268 |
Q |
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| T |
22813150 |
aattacacgcgtggatattactctcctttttaattaaaataattacacaggt |
22813201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 2214712 - 2214877
Alignment:
| Q |
32 |
ggaggaggaggtattggtttaagtttggtatggattgaagatgatagggtttctggtaaattaatagacgattgcatggaaaagatagaggtttggtatg |
131 |
Q |
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| T |
2214712 |
ggaggaggaggtattggtttaagtttggtatggattgaagatgatagtgtttctggtaaattaatagacgattgaatggcgaagataaaggtttggtatg |
2214811 |
T |
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| Q |
132 |
gattgaagatgaaagttcaatgttagctttcatgaagattgcacgtgcctgccaatttttccttga |
197 |
Q |
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| T |
2214812 |
gattcaagatgaaagttcaatgttatctttcatgaagattgcacgtgcctgccaattttttcttga |
2214877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 24 - 268
Target Start/End: Complemental strand, 39688726 - 39688486
Alignment:
| Q |
24 |
tattgggaggaggaggaggtattggtttaagtttggtatggattgaagatgatagggtttctggtaaattaatagacgattgcatggaaaagatagaggt |
123 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||||| | || |
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| T |
39688726 |
tattgggatgaggaggaggtattggtttaagtttggtacggattgaagatgatagggtttctggtaaattaatagacaattgaatggcgaagataaatgt |
39688627 |
T |
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| Q |
124 |
ttggtatggattgaagat--gaaagttcaatgttagctttcatgaagattgcacgtgcctgccaatttttccttgannnnnnnnnnnnattctgcaatta |
221 |
Q |
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| T |
39688626 |
ttggtatggattgaagatgagaaagttcaatgttacctttcatgaagattgcacgtgcctgtcaattttttttt------ttttttttcttctgcaatta |
39688533 |
T |
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| Q |
222 |
cacgcgtggacattactctcctttttaattaaaataattacacaggt |
268 |
Q |
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| T |
39688532 |
cacgcgtggatattactctcctttttaattaaaataattacacaggt |
39688486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 21844043 - 21844194
Alignment:
| Q |
45 |
ttggtttaagtttggtatggattgaagatgatagggtttctggtaaattaatagacgattgcatggaaaagatagaggtttggtatggattgaagatgaa |
144 |
Q |
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||||||| |||||||||||||| ||||| ||||||||| ||| |||||||| || ||||| ||| | |||||| | |||||||||||||||||| |||| |
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| T |
21844043 |
ttggtttttgtttggtatggatttaagataatagggtttttggaaaattaatggaagattgaatgaagaagataaatgtttggtatggattgaaggtgaa |
21844142 |
T |
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| Q |
145 |
agttcaatgttagctttcatgaagattgcacgtgcctgccaatttttccttga |
197 |
Q |
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|||||||||||| |||||||||||||| || |||||||||||||| ||||||| |
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| T |
21844143 |
agttcaatgttacctttcatgaagatt-catgtgcctgccaatttgtccttga |
21844194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 21844215 - 21844271
Alignment:
| Q |
210 |
attctgcaattacacgcgtggacattactctcctttttaattaaaataattacacag |
266 |
Q |
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||| ||||||||||||| |||| |||||||||||||| |||||||| |||||||||| |
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| T |
21844215 |
attttgcaattacacgcatggatattactctccttttcaattaaaaaaattacacag |
21844271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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