View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7008_high_2 (Length: 350)
Name: NF7008_high_2
Description: NF7008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7008_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 43001747 - 43001414
Alignment:
| Q |
1 |
gaaataaaaacacacctggataagatggagcttcattaatgacatggggcaagtcaaaattaatggctttaatgttgggatacttagagacaatcatgtt |
100 |
Q |
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| T |
43001747 |
gaaataaaaacacacctggataagatggagcttcattaatgacatggggcaagtcaaaattaatggctttaatgttgggatacttagagacaatcatgtt |
43001648 |
T |
|
| Q |
101 |
agtaacagttccaattccaccaccaacatcaacaatagatccaagaccctcaaaacctgaatatgtttcaagaactttgttcattatgatactagagtaa |
200 |
Q |
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| T |
43001647 |
agtaacagttccaattccaccaccaacatcaacaatagatccaagaccctcaaaacctgaatatgtttcaagaactttgttcattatgatactagagtaa |
43001548 |
T |
|
| Q |
201 |
tcagacatgcccttgttgaaaatcttattggacctttgatctgtgctatggaattcaaaagatgtcattccataagcattgtaaaatggaaggccaccct |
300 |
Q |
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| T |
43001547 |
tcagacatgcccttgttgaaaatcttattggacctttgatctgtgctatggaattcaaaggatgtcattccataagcattgtaaaatggaaggccaccct |
43001448 |
T |
|
| Q |
301 |
cctgaattgaatctgttaagtggtacctgcaatt |
334 |
Q |
| |
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| T |
43001447 |
cctgaattgaatctgttaagtggtacctgcaatt |
43001414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 42474171 - 42474448
Alignment:
| Q |
14 |
acctggataagatggagcttcattaatgacatggggcaagtcaaaattaatggctttaatgttgggatacttagagacaatcatgttagtaacagttcca |
113 |
Q |
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|||||||||||||||||| || | |||||||||||| || ||||||||||| | |||||| ||||||| || ||||||||| ||||| | |||| |||| |
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| T |
42474171 |
acctggataagatggagcatcttcaatgacatggggtaaatcaaaattaatacccttaatggtgggatattttgagacaatcgtgttaattacagctcca |
42474270 |
T |
|
| Q |
114 |
attccaccaccaacatcaacaatagatccaagaccctcaaaacctgaatatgtttcaagaactttgttcattatgatactagagtaatcagacatgccct |
213 |
Q |
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| |||||||| |||||||||| |||| ||| || |||||||||| || || ||||||| ||| |||||| |||| |||||| ||||||||| |||| |
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| T |
42474271 |
gtaccaccacctacatcaacaagagatttaaggccttcaaaacctgtgtaggtctcaagaattttcttcattgtgatggtagagtgatcagacatcccct |
42474370 |
T |
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| Q |
214 |
tgttgaaaatcttattggacctttgatctgtgctatggaattcaaaagatgtcattccataagcattgtaaaatggaa |
291 |
Q |
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||||||||| ||| || ||||| ||||||| | |||| ||||||| | ||||||||||||||| |||| ||||||| |
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| T |
42474371 |
tgttgaaaaccttgttaaaccttggatctgttccatggtattcaaaggctgtcattccataagccttgttgaatggaa |
42474448 |
T |
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