View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7008_low_1 (Length: 524)

Name: NF7008_low_1
Description: NF7008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7008_low_1
NF7008_low_1
[»] chr1 (22 HSPs)
chr1 (18-238)||(13597264-13597484)
chr1 (234-447)||(20492441-20492653)
chr1 (234-397)||(13597590-13597753)
chr1 (269-358)||(13676961-13677050)
chr1 (269-341)||(13595800-13595872)
chr1 (445-504)||(20492244-20492303)
chr1 (441-518)||(13597864-13597941)
chr1 (274-332)||(13552070-13552128)
chr1 (446-514)||(15891671-15891736)
chr1 (18-78)||(15894908-15894968)
chr1 (242-358)||(20377227-20377342)
chr1 (446-518)||(20381594-20381666)
chr1 (242-358)||(20511239-20511354)
chr1 (446-507)||(13690430-13690494)
chr1 (449-508)||(13520855-13520911)
chr1 (449-508)||(19131379-19131435)
chr1 (275-326)||(13652691-13652742)
chr1 (18-133)||(20378968-20379083)
chr1 (18-133)||(20509470-20509585)
chr1 (468-514)||(13557199-13557245)
chr1 (447-514)||(13616172-13616236)
chr1 (447-514)||(20505909-20505973)
[»] scaffold0012 (3 HSPs)
scaffold0012 (234-447)||(121949-122162)
scaffold0012 (18-233)||(121635-121850)
scaffold0012 (440-518)||(122240-122318)
[»] chr6 (6 HSPs)
chr6 (18-238)||(21817950-21818170)
chr6 (234-397)||(21818276-21818438)
chr6 (441-518)||(21818549-21818626)
chr6 (18-78)||(22272510-22272570)
chr6 (275-327)||(21816461-21816513)
chr6 (465-518)||(22270069-22270122)
[»] scaffold0006 (9 HSPs)
scaffold0006 (18-238)||(4549-4769)
scaffold0006 (234-447)||(211914-212127)
scaffold0006 (18-233)||(211600-211815)
scaffold0006 (234-397)||(4875-5038)
scaffold0006 (269-358)||(174543-174632)
scaffold0006 (269-358)||(189951-190040)
scaffold0006 (441-518)||(5149-5226)
scaffold0006 (446-488)||(212211-212253)
scaffold0006 (275-326)||(142452-142503)
[»] chr2 (5 HSPs)
chr2 (20-155)||(38051394-38051529)
chr2 (246-358)||(38053232-38053344)
chr2 (84-142)||(30701053-30701111)
chr2 (446-506)||(38047816-38047876)
chr2 (281-327)||(38055461-38055507)
[»] chr8 (7 HSPs)
chr8 (18-197)||(20838316-20838494)
chr8 (446-518)||(20765270-20765342)
chr8 (274-332)||(20769652-20769710)
chr8 (274-332)||(20779446-20779504)
chr8 (26-142)||(20770435-20770551)
chr8 (26-142)||(20780229-20780345)
chr8 (18-133)||(20767808-20767923)
[»] scaffold0355 (1 HSPs)
scaffold0355 (446-518)||(3124-3196)
[»] scaffold0069 (4 HSPs)
scaffold0069 (242-358)||(47529-47644)
scaffold0069 (446-518)||(61383-61455)
scaffold0069 (18-133)||(49270-49385)
scaffold0069 (277-326)||(41888-41936)
[»] scaffold0460 (2 HSPs)
scaffold0460 (269-358)||(6760-6848)
scaffold0460 (269-358)||(11325-11413)
[»] scaffold0238 (1 HSPs)
scaffold0238 (447-514)||(23860-23924)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 13597264 - 13597484
Alignment:
Q  18 attgggacggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaaga 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||  || |||||||||||||||||||||||||||||||||||    
T  13597264 attgggacggtgacctcaaccaaaccgtaaagaatctgtttgatgacaaggtatgttttatttttctccaccaatttatttgctttcggttagtttaaga 13597363  T
Q  118 ctatctagctagatcatgatcatttcgaaggtcgaaaaaatgtagtgtaatacacaaatatattatacataggaccttatttaagtgcttatggcataag 217  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13597364 ctatctagctagatcatgatcattttgagggtcgaaaaaatgtagtgtaatacacaaaaatattatacataggaccttatttaagtgcttatggcataag 13597463  T
Q  218 ggtttatcacatgaaatgtaa 238  Q
    |||||||||||||||||||||    
T  13597464 ggtttatcacatgaaatgtaa 13597484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 234 - 447
Target Start/End: Complemental strand, 20492653 - 20492441
Alignment:
Q  234 tgtaagtttccacacttttagtaggtgagatcggattatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcagga 333  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  20492653 tgtaaatttccacacttttagtaggtgatatcggattatgaactatattttactactacttttgtttgaattaacactcaatacgattgtttttgcagga 20492554  T
Q  334 aggatttgatggtttagagcatttattttccctatgaaaagaattgtggtatggtagatttgagcataatttaggagtttctaggtgagatttgttcatt 433  Q
     ||||||||||||||||||||||||||||||||||||||| |  ||||||||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  20492553 -ggatttgatggtttagagcatttattttccctatgaaaaaatatgtggtatggtcgacttgagcataatttaggagtttccaggtgagatttgttcatt 20492455  T
Q  434 ctactttatgttcc 447  Q
    ||||||||| ||||    
T  20492454 ctactttattttcc 20492441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 234 - 397
Target Start/End: Original strand, 13597590 - 13597753
Alignment:
Q  234 tgtaagtttccacacttttagtaggtgagatcggattatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcagga 333  Q
    ||||| |||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13597590 tgtaaatttccacacttttagtaggtgatatcgaattatgaactacattttactactacttttgtttgaattaacacgcaatacaattgtttttgcagga 13597689  T
Q  334 aggatttgatggtttagagcatttattttccctatgaaaagaattgtggtatggtagatttgag 397  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  13597690 tggatttgatggtttagagcatttattttccctatgaaaagaattgtggtatggtcgacttgag 13597753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 13676961 - 13677050
Alignment:
Q  269 ttatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcaggaaggatttgatggtttagagcattta 358  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||  ||||||| | ||||  ||||||||    
T  13676961 ttatgaactatattttactactacatttgtttgaattaacacgcgatacaattgtttttgcaggtgggatttggtagtttcaagcattta 13677050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 13595800 - 13595872
Alignment:
Q  269 ttatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcaggaaggatttg 341  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||  |||||||    
T  13595800 ttatgaactatattttactactacatttgtttgaattaacacgcgatacaattgtttttgcaggtgggatttg 13595872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 445 - 504
Target Start/End: Complemental strand, 20492303 - 20492244
Alignment:
Q  445 tccacattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaagg 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20492303 tccacattctaattaatacgttgaatgataagaccatcatatatcctcacatttgcaagg 20492244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 13597864 - 13597941
Alignment:
Q  441 atgttccacattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggtacccaacaccaaa 518  Q
    |||| |||||| |||||||||| | |||||||| |||| ||||| |||||||||||||| ||||||||||||||||||    
T  13597864 atgtcccacatactaattaatatgctgaatgatgagacaatcatctatcctcacatttgcaaggtacccaacaccaaa 13597941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 13552070 - 13552128
Alignment:
Q  274 aactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcagg 332  Q
    |||||||||||| ||||| ||||||||||| |||| |||||||||||||||||| ||||    
T  13552070 aactatattttattactagttttgtttgaactaactcgcaatacaattgtttttacagg 13552128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 446 - 514
Target Start/End: Complemental strand, 15891736 - 15891671
Alignment:
Q  446 ccacattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggtacccaacac 514  Q
    ||||||||||||||||| |||||||||   |||||| || |||||||||||||| ||||||||||||||    
T  15891736 ccacattctaattaatatgttgaatga---gaccataatctatcctcacatttgcaaggtacccaacac 15891671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 15894968 - 15894908
Alignment:
Q  18 attgggacggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttac 78  Q
    ||||||| |||||||||||  ||||| |||||||  |||||||||||||||||||||||||    
T  15894968 attgggagggtgacctcaatggaaccataaagaagatgtttgatgagaaggtatgttttac 15894908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 358
Target Start/End: Original strand, 20377227 - 20377342
Alignment:
Q  242 tccacacttttagtaggtgagatcggattatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcaggaaggatttg 341  Q
    |||||||||||| || | || ||| | ||||||||||||||||||| |||| |||| ||||| |||| | |||||||||||||||  ||||  |||||||    
T  20377227 tccacacttttactatgggatatcagcttatgaactatattttactgctacgtttg-ttgaactaactcacaatacaattgttttcacaggtgggatttg 20377325  T
Q  342 atggtttagagcattta 358  Q
     ||||||  ||||||||    
T  20377326 gtggtttcaagcattta 20377342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 518
Target Start/End: Original strand, 20381594 - 20381666
Alignment:
Q  446 ccacattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggtacccaacaccaaa 518  Q
    |||| ||||||||||||  ||||||||| |||||||||| |||||||||| ||| ||||| | ||||||||||    
T  20381594 ccactttctaattaatatattgaatgatgagaccatcatctatcctcacaattgcaaggtgcgcaacaccaaa 20381666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 358
Target Start/End: Complemental strand, 20511354 - 20511239
Alignment:
Q  242 tccacacttttagtaggtgagatcggattatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcaggaaggatttg 341  Q
    |||||||||||| || | || ||| | ||||||||||||||||||| |||| |||| ||||| |||| | |||||||||||||||  ||||  |||||||    
T  20511354 tccacacttttactatgggatatcagcttatgaactatattttactgctacgtttg-ttgaactaactcacaatacaattgttttcacaggtgggatttg 20511256  T
Q  342 atggtttagagcattta 358  Q
     ||||||  ||||||||    
T  20511255 gtggtttcaagcattta 20511239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 446 - 507
Target Start/End: Original strand, 13690430 - 13690494
Alignment:
Q  446 ccacattctaattaatacgttgaatgataagac---catcatatatcctcacatttggaaggtac 507  Q
    ||||||||||||||||| |||||||||| ||||   |||||| |||||||||||||| |||||||    
T  13690430 ccacattctaattaatatgttgaatgatgagaccatcatcatctatcctcacatttgcaaggtac 13690494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 508
Target Start/End: Original strand, 13520855 - 13520911
Alignment:
Q  449 cattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggtacc 508  Q
    |||||||||||||| |||||||||   ||||||||| |||||||||||||| ||||||||    
T  13520855 cattctaattaatatgttgaatga---gaccatcatctatcctcacatttgcaaggtacc 13520911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 508
Target Start/End: Complemental strand, 19131435 - 19131379
Alignment:
Q  449 cattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggtacc 508  Q
    |||||||||||||| |||||||||   ||||||||| |||||||||||||| ||||||||    
T  19131435 cattctaattaatatgttgaatga---gaccatcatctatcctcacatttgcaaggtacc 19131379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 13652691 - 13652742
Alignment:
Q  275 actatattttactactacttttgtttgaattaacacgcaatacaattgtttt 326  Q
    ||||||| ||||||||||||||||||||| |||| |  ||||||||||||||    
T  13652691 actatatgttactactacttttgtttgaactaactcataatacaattgtttt 13652742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 20378968 - 20379083
Alignment:
Q  18 attgggacggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaaga 117  Q
    ||||||| |||||||||||| ||||| |||||||  |||||  ||| ||||||| |||||   |  |||| |||||||||| |||| ||| |||||||||    
T  20378968 attgggagggtgacctcaacagaaccataaagaaaatgttttgtgataaggtatattttattatcatccatcaatttatttactttgggtaagtttaaga 20379067  T
Q  118 ctatctagctagatca 133  Q
      ||||| ||||||||    
T  20379068 aaatctatctagatca 20379083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 20509585 - 20509470
Alignment:
Q  18 attgggacggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaaga 117  Q
    ||||||| |||||||||||| ||||| |||||||  |||||  ||| ||||||| |||||   |  |||| |||||||||| |||| ||| |||||||||    
T  20509585 attgggagggtgacctcaacagaaccataaagaaaatgttttgtgataaggtatattttattatcatccatcaatttatttactttgggtaagtttaaga 20509486  T
Q  118 ctatctagctagatca 133  Q
      ||||| ||||||||    
T  20509485 aaatctatctagatca 20509470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 13557199 - 13557245
Alignment:
Q  468 aatgataagaccatcatatatcctcacatttggaaggtacccaacac 514  Q
    |||||| |||||||||| |||||||||||||| |||||||| |||||    
T  13557199 aatgatgagaccatcatctatcctcacatttgcaaggtacctaacac 13557245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 13616172 - 13616236
Alignment:
Q  447 cacattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggtacccaacac 514  Q
    |||||||||||||||| ||||||||   ||||||| || |||||||  ||||| ||||||||||||||    
T  13616172 cacattctaattaatatgttgaatg---agaccataatctatcctcgtatttgcaaggtacccaacac 13616236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 514
Target Start/End: Complemental strand, 20505973 - 20505909
Alignment:
Q  447 cacattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggtacccaacac 514  Q
    |||||||| ||||||| |||||||||   ||||||||| |||||||  ||||| ||||||||||||||    
T  20505973 cacattctcattaatatgttgaatga---gaccatcatctatcctcgtatttgcaaggtacccaacac 20505909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 234 - 447
Target Start/End: Original strand, 121949 - 122162
Alignment:
Q  234 tgtaagtttccacacttttagtaggtgagatcggattatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcagga 333  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  121949 tgtaaatttccacacttttagtaggtgatatcggattatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcagga 122048  T
Q  334 aggatttgatggtttagagcatttattttccctatgaaaagaattgtggtatggtagatttgagcataatttaggagtttctaggtgagatttgttcatt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  122049 aggatttgatggtttagagcatttattttccctatgaaaagaattgtggtatggtcgacttgagcataatttaggagtttccaggtgagatttgttcatt 122148  T
Q  434 ctactttatgttcc 447  Q
    | ||||||| ||||    
T  122149 ccactttattttcc 122162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 121635 - 121850
Alignment:
Q  18 attgggacggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaaga 117  Q
    ||||||| ||||| |||||| |||| ||||||||  ||||||| || |||||||||||||| ||  |||| || ||||||||||||||||||||||||||    
T  121635 attgggaaggtgaactcaacggaactgtaaagaaaatgtttgacgataaggtatgttttactttcgtccatcactttatttgctttcggttagtttaaga 121734  T
Q  118 ctatctagctagatcatgatcatttcgaaggtcgaaaaaatgtagtgtaatacacaaatatattatacataggaccttatttaagtgcttatggcataag 217  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||    
T  121735 ctatctagctagctcatgatcattttgaaggtcgaaaaaatgtagtgtaatagactaaaatattatacataggaccttatttaagtgcttatggcataag 121834  T
Q  218 ggtttatcacatgaaa 233  Q
    | ||||||||||||||    
T  121835 gctttatcacatgaaa 121850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 440 - 518
Target Start/End: Original strand, 122240 - 122318
Alignment:
Q  440 tatgttccacattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggtacccaacaccaaa 518  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  122240 tatgttccacattctaattaatacgctgaatgataagaccatcatatatcctcacatttgcaaggtacctaacaccaaa 122318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 21817950 - 21818170
Alignment:
Q  18 attgggacggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaaga 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||  || |||||||||||||||||||||||||||||||||||    
T  21817950 attgggacggtgacctcaacctaaccgtaaagaatctgtttgatgataaggtatgttttatttttctccaccaatttatttgctttcggttagtttaaga 21818049  T
Q  118 ctatctagctagatcatgatcatttcgaaggtcgaaaaaatgtagtgtaatacacaaatatattatacataggaccttatttaagtgcttatggcataag 217  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||    
T  21818050 ctatctagctagatcatgatcattttgaaggtcgaaaaaatgtagtgtaatagactaaaatattatacataggaccttatttaagtgcttatggcataag 21818149  T
Q  218 ggtttatcacatgaaatgtaa 238  Q
    |||||||||||||||||||||    
T  21818150 ggtttatcacatgaaatgtaa 21818170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 234 - 397
Target Start/End: Original strand, 21818276 - 21818438
Alignment:
Q  234 tgtaagtttccacacttttagtaggtgagatcggattatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcagga 333  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||     
T  21818276 tgtaaatttccacacttttagtaggtgatatcggattatgaactatattttactactacttttgtttgaattaacactcaatacgattgtttttgcagg- 21818374  T
Q  334 aggatttgatggtttagagcatttattttccctatgaaaagaattgtggtatggtagatttgag 397  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||    
T  21818375 aggatttgatggtttagagcatttatttttcctatgaaaagaattgtggtatggtcgacttgag 21818438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 21818549 - 21818626
Alignment:
Q  441 atgttccacattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggtacccaacaccaaa 518  Q
    |||| ||||||||||||||||| |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||    
T  21818549 atgtcccacattctaattaatatgttgaatgatgagaccatcatctatcctcacatttgcaaggtacccaacaccaaa 21818626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 22272570 - 22272510
Alignment:
Q  18 attgggacggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttac 78  Q
    ||||||| |||||||||||| ||||||||||||  ||||||||||| ||||||||||||||    
T  22272570 attgggagggtgacctcaacagaaccgtaaagagactgtttgatgacaaggtatgttttac 22272510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 21816461 - 21816513
Alignment:
Q  275 actatattttactactacttttgtttgaattaacacgcaatacaattgttttt 327  Q
    ||||||||||||||||||||||||||||| |||| |  |||||||||||||||    
T  21816461 actatattttactactacttttgtttgaactaactcataatacaattgttttt 21816513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 518
Target Start/End: Complemental strand, 22270122 - 22270069
Alignment:
Q  465 ttgaatgataagaccatcatatatcctcacatttggaaggtacccaacaccaaa 518  Q
    ||||||||  |||| ||||| |||| ||||||||| ||||||||||||||||||    
T  22270122 ttgaatgaccagactatcatctatcgtcacatttgcaaggtacccaacaccaaa 22270069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 181; Significance: 1e-97; HSPs: 9)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 4549 - 4769
Alignment:
Q  18 attgggacggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaaga 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||  || |||||||||||||||||||||||||||||||||||    
T  4549 attgggacggtgacctcaaccaaaccgtaaagaatctgtttgatgacaaggtatgttttatttttctccaccaatttatttgctttcggttagtttaaga 4648  T
Q  118 ctatctagctagatcatgatcatttcgaaggtcgaaaaaatgtagtgtaatacacaaatatattatacataggaccttatttaagtgcttatggcataag 217  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||    
T  4649 ctatctagctagatcatgatcattttgatggtcgaaaaaatgtagtgtaatatactaaaatattatacataggaccttatttaagtgcttatggcataag 4748  T
Q  218 ggtttatcacatgaaatgtaa 238  Q
    |||||||||||||||||||||    
T  4749 ggtttatcacatgaaatgtaa 4769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 234 - 447
Target Start/End: Original strand, 211914 - 212127
Alignment:
Q  234 tgtaagtttccacacttttagtaggtgagatcggattatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcagga 333  Q
    ||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  211914 tgtaaatttccacacttttagtaggtgctatcggattatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcagga 212013  T
Q  334 aggatttgatggtttagagcatttattttccctatgaaaagaattgtggtatggtagatttgagcataatttaggagtttctaggtgagatttgttcatt 433  Q
    |||||||||||||||||||||||||||||||||||||||| |  ||||||||||| || |||||||||||||||||||||  ||||||||||||||||||    
T  212014 aggatttgatggtttagagcatttattttccctatgaaaaaatatgtggtatggtcgacttgagcataatttaggagttttcaggtgagatttgttcatt 212113  T
Q  434 ctactttatgttcc 447  Q
    ||||||||| ||||    
T  212114 ctactttattttcc 212127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 211600 - 211815
Alignment:
Q  18 attgggacggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaaga 117  Q
    ||||||| ||||| |||||| |||| ||||||||  ||||||| || |||||||||||||| ||  |||| || ||||||||||||||||||||||||||    
T  211600 attgggaaggtgaactcaacggaactgtaaagaaaatgtttgacgataaggtatgttttactttcgtccatcactttatttgctttcggttagtttaaga 211699  T
Q  118 ctatctagctagatcatgatcatttcgaaggtcgaaaaaatgtagtgtaatacacaaatatattatacataggaccttatttaagtgcttatggcataag 217  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||    
T  211700 ctatctagctagctcatgatcattttgaaggtcgaaaaaatgtagtgtaatagactaaaatattatacataggaccttatttaagtgcttatggcataag 211799  T
Q  218 ggtttatcacatgaaa 233  Q
    | ||||||||||||||    
T  211800 gctttatcacatgaaa 211815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 234 - 397
Target Start/End: Original strand, 4875 - 5038
Alignment:
Q  234 tgtaagtttccacacttttagtaggtgagatcggattatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcagga 333  Q
    ||||| |||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4875 tgtaaatttccacacttttagtaggtgatatcgaattatgaactacattttactactacttttgtttgaattaacacgcaatacaattgtttttgcagga 4974  T
Q  334 aggatttgatggtttagagcatttattttccctatgaaaagaattgtggtatggtagatttgag 397  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  4975 tggatttgatggtttagagcatttattttccctatgaaaagaattgtggtatggtcgacttgag 5038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 174543 - 174632
Alignment:
Q  269 ttatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcaggaaggatttgatggtttagagcattta 358  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||  ||||||| | ||||  ||||||||    
T  174543 ttatgaactatattttactactacatttgtttgaattaacacgcgatacaattgtttttgcaggtgggatttggtagtttcaagcattta 174632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 189951 - 190040
Alignment:
Q  269 ttatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcaggaaggatttgatggtttagagcattta 358  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||  ||||||| | ||||  ||||||||    
T  189951 ttatgaactatattttactactacatttgtttgaattaacacgcgatacaattgtttttgcaggtgggatttggtagtttcaagcattta 190040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 5149 - 5226
Alignment:
Q  441 atgttccacattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggtacccaacaccaaa 518  Q
    |||| |||||| |||||||||| | |||||||| |||| ||||| |||||||||||||| ||||||||||||||||||    
T  5149 atgtcccacatactaattaatatgctgaatgatgagacaatcatctatcctcacatttgcaaggtacccaacaccaaa 5226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 446 - 488
Target Start/End: Original strand, 212211 - 212253
Alignment:
Q  446 ccacattctaattaatacgttgaatgataagaccatcatatat 488  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  212211 ccacattctaattaatacgttgaatgataaaaccatcatatat 212253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 142452 - 142503
Alignment:
Q  275 actatattttactactacttttgtttgaattaacacgcaatacaattgtttt 326  Q
    ||||||| ||||||||||||||||||||| |||| |  ||||||||||||||    
T  142452 actatatgttactactacttttgtttgaactaactcataatacaattgtttt 142503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 38051529 - 38051394
Alignment:
Q  20 tgggacggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaagact 119  Q
    ||||| |||||| |||||||||| |||||||| || |||||||| |||||||||||||| ||  |||||||||||||||||||| || ||||||||||||    
T  38051529 tgggagggtgacgtcaaccgaactgtaaagaaactatttgatgacaaggtatgttttactttcatccaccaatttatttgctttgggatagtttaagact 38051430  T
Q  120 atctagctagatcatgatcatttcgaaggtcgaaaa 155  Q
    ||||| ||||||||||||||||| |||||| |||||    
T  38051429 atctatctagatcatgatcattttgaaggtggaaaa 38051394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 358
Target Start/End: Complemental strand, 38053344 - 38053232
Alignment:
Q  246 cacttttagtaggtgagatcggattatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcaggaaggatttgatgg 345  Q
    ||||||| ||||| || ||| | || || |||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||  ||||||| | |    
T  38053344 cacttttggtaggggatatctgcttctgcactatattttactactacttttgtgtgaactaacatgaaatacaattgtttttgcaggtgggatttggtag 38053245  T
Q  346 tttagagcattta 358  Q
    |||  ||||||||    
T  38053244 tttcaagcattta 38053232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 30701111 - 30701053
Alignment:
Q  84 tccaccaatttatttgctttcggttagtttaagactatctagctagatcatgatcattt 142  Q
    |||| |||||||||| |||| | |||||||||||||||||| |||||||||||||||||    
T  30701111 tccatcaatttatttactttggtttagtttaagactatctatctagatcatgatcattt 30701053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 506
Target Start/End: Complemental strand, 38047876 - 38047816
Alignment:
Q  446 ccacattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggta 506  Q
    |||||||||| | |||||||||| |||| ||||||||||||||||||| ||||| ||||||    
T  38047876 ccacattctagtcaatacgttgagtgatgagaccatcatatatcctcatatttgcaaggta 38047816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 38055507 - 38055461
Alignment:
Q  281 ttttactactacttttgtttgaattaacacgcaatacaattgttttt 327  Q
    |||||||||||| ||||||| || |||| ||||||||||||||||||    
T  38055507 ttttactactacgtttgtttaaactaactcgcaatacaattgttttt 38055461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 20838494 - 20838316
Alignment:
Q  18 attgggacggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaaga 117  Q
    ||||||| |||||||| |||||||||||||||||  | ||| |||  |||||| ||||||| || ||||||| |||||||| ||||  | ||||||||||    
T  20838494 attgggagggtgacctaaaccgaaccgtaaagaagttattttatgtcaaggtaagttttactttcctccaccgatttattttcttttagatagtttaaga 20838395  T
Q  118 ctatctagctagatcatgatcatttcgaaggtcgaaaaaatgtagtgtaatacacaaatatattatacataggaccttat 197  Q
    |||| |||||||| ||||| ||||| | |||||| |||| |||||||||||| || || ||||||||| || ||||||||    
T  20838394 ctatatagctagaccatgaccattttggaggtcg-aaaagtgtagtgtaatagactaaaatattatacgtaagaccttat 20838316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 518
Target Start/End: Complemental strand, 20765342 - 20765270
Alignment:
Q  446 ccacattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggtacccaacaccaaa 518  Q
    |||| ||||||||||||  ||||||||| |||||||||| |||||||||||||| ||||||| ||||||||||    
T  20765342 ccactttctaattaatatattgaatgatgagaccatcatctatcctcacatttgcaaggtacgcaacaccaaa 20765270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 20769710 - 20769652
Alignment:
Q  274 aactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcagg 332  Q
    |||||||||||| |||||||| |||||||| |||| |||||||||||||||||| ||||    
T  20769710 aactatattttattactacttctgtttgaactaactcgcaatacaattgtttttacagg 20769652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 20779504 - 20779446
Alignment:
Q  274 aactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcagg 332  Q
    |||||||||||| |||||||| |||||||| |||| |||||||||||||||||| ||||    
T  20779504 aactatattttattactacttctgtttgaactaactcgcaatacaattgtttttacagg 20779446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 20770551 - 20770435
Alignment:
Q  26 ggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaagactatctag 125  Q
    |||||||||||| ||||| |||||||  |||||| ||| |||||||||||||| ||  | |||||| ||||||||| |  |||||||||||||| ||||     
T  20770551 ggtgacctcaacggaaccataaagaaaatgtttgttgataaggtatgttttactttcattcaccaagttatttgctct-agttagtttaagactgtctat 20770453  T
Q  126 ctagatca-tgatcattt 142  Q
    ||| |||| |||||||||    
T  20770452 ctaaatcattgatcattt 20770435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 20780345 - 20780229
Alignment:
Q  26 ggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaagactatctag 125  Q
    |||||||||||| ||||| |||||||  |||||| ||| |||||||||||||| ||  | |||||| ||||||||| |  |||||||||||||| ||||     
T  20780345 ggtgacctcaacggaaccataaagaaaatgtttgttgataaggtatgttttactttcattcaccaagttatttgctct-agttagtttaagactgtctat 20780247  T
Q  126 ctagatca-tgatcattt 142  Q
    ||| |||| |||||||||    
T  20780246 ctaaatcattgatcattt 20780229  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 20767923 - 20767808
Alignment:
Q  18 attgggacggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaaga 117  Q
    ||||||| |||||||||||| ||||| |||||||  |||||  ||| ||||||| |||||   |  |||| |||||||||| |||| ||| |||||||||    
T  20767923 attgggagggtgacctcaacagaaccataaagaaaatgttttgtgataaggtatattttattatcatccatcaatttatttactttgggtaagtttaaga 20767824  T
Q  118 ctatctagctagatca 133  Q
      ||||| ||||||||    
T  20767823 aaatctatctagatca 20767808  T

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Target: scaffold0355 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 446 - 518
Target Start/End: Original strand, 3124 - 3196
Alignment:
Q  446 ccacattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggtacccaacaccaaa 518  Q
    |||| ||||||||||||  ||||||||| |||||||||| |||||||||||||| ||||| | ||||||||||    
T  3124 ccactttctaattaatatattgaatgatgagaccatcatctatcctcacatttgcaaggtgcgcaacaccaaa 3196  T

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Target: scaffold0069 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 358
Target Start/End: Original strand, 47529 - 47644
Alignment:
Q  242 tccacacttttagtaggtgagatcggattatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcaggaaggatttg 341  Q
    |||||||||||| || | || ||| | ||||||||||||||||||| |||| |||| ||||| |||| | |||||||||||||||  ||||  |||||||    
T  47529 tccacacttttactatgggatatcagcttatgaactatattttactgctacgtttg-ttgaactaactcacaatacaattgttttcacaggtgggatttg 47627  T
Q  342 atggtttagagcattta 358  Q
     ||||||  ||||||||    
T  47628 gtggtttcaagcattta 47644  T

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Target: scaffold0069; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 518
Target Start/End: Original strand, 61383 - 61455
Alignment:
Q  446 ccacattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggtacccaacaccaaa 518  Q
    |||| ||||||||||||  ||||||||| |||||||||| |||||||||| ||| ||||| | ||||||||||    
T  61383 ccactttctaattaatatattgaatgatgagaccatcatctatcctcacaattgcaaggtgcgcaacaccaaa 61455  T

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Target: scaffold0069; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 49270 - 49385
Alignment:
Q  18 attgggacggtgacctcaaccgaaccgtaaagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaaga 117  Q
    ||||||| |||||||||||| ||||| |||||||  |||||  ||| ||||||| |||||   |  |||| |||||||||| |||| ||| |||||||||    
T  49270 attgggagggtgacctcaacagaaccataaagaaaatgttttgtgataaggtatattttattatcatccatcaatttatttactttgggtaagtttaaga 49369  T
Q  118 ctatctagctagatca 133  Q
      ||||| ||||||||    
T  49370 aaatctatctagatca 49385  T

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Target: scaffold0069; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 41888 - 41936
Alignment:
Q  277 tatattttactactacttttgtttgaattaacacgcaatacaattgtttt 326  Q
    ||||||||||||||||||||| ||||| |||| | |||||||||||||||    
T  41888 tatattttactactacttttg-ttgaactaactcacaatacaattgtttt 41936  T

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Target: scaffold0460 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 6760 - 6848
Alignment:
Q  269 ttatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcaggaaggatttgatggtttagagcattta 358  Q
    ||||||||||||||||||| |||| |||| ||||| |||| | |||||||||||||||| ||||  ||||||| | ||||  ||||||||    
T  6760 ttatgaactatattttactgctacgtttg-ttgaactaactcacaatacaattgtttttacaggtgggatttggtagtttcaagcattta 6848  T

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Target: scaffold0460; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 11325 - 11413
Alignment:
Q  269 ttatgaactatattttactactacttttgtttgaattaacacgcaatacaattgtttttgcaggaaggatttgatggtttagagcattta 358  Q
    ||||||||||||||||||| |||| |||| ||||| |||| | |||||||||||||||| ||||  ||||||| | ||||  ||||||||    
T  11325 ttatgaactatattttactgctacgtttg-ttgaactaactcacaatacaattgtttttacaggtgggatttggtagtttcaagcattta 11413  T

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Target: scaffold0238 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 447 - 514
Target Start/End: Complemental strand, 23924 - 23860
Alignment:
Q  447 cacattctaattaatacgttgaatgataagaccatcatatatcctcacatttggaaggtacccaacac 514  Q
    |||||||||||||||| |||||||||   ||||||||| |||||||  ||||| ||||||||||||||    
T  23924 cacattctaattaatatgttgaatga---gaccatcatctatcctcgtatttgcaaggtacccaacac 23860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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