View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7008_low_2 (Length: 415)
Name: NF7008_low_2
Description: NF7008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7008_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 36269067 - 36268678
Alignment:
| Q |
16 |
tgttggaggatacaatgagtttatggtataaggtgttatgtgagtgttacatgcaggaaaggggggaagttgtgtgtagggaggggaggtgggtcagtgc |
115 |
Q |
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| T |
36269067 |
tgttggaggatacagtgagtttatggtataaggtgttatgtgagtgttacatgcaggaaagggggaaagttgtgtgtagggaggggaggtgggtcagtgt |
36268968 |
T |
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| Q |
116 |
gttggcagactgtgaataatattagagagggtgttgggctaatagattgaggtcgactgcttgataatatttgtcggaaggttggggatgagtcttctac |
215 |
Q |
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| T |
36268967 |
gttggcatactgtgaataatattagagagggtgttgcgctagtagattgaggtcgactgcttgataatatttgtcggaaggttggtgatgagtcttctac |
36268868 |
T |
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| Q |
216 |
tctgttttggaatgatccttggttggatggtagatctttgaaagatagttttagaagtttgtttgagttagctgataacaaattggcaacagtcgcggag |
315 |
Q |
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| T |
36268867 |
tttgttttgaaatgatccttggttggatcgtagatctttgaaagatagttttagaagtttgtttcagttagctgataacaaattggcaacggtcgcggaa |
36268768 |
T |
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| Q |
316 |
atgttttctttgggttggggagtgaatgacgaggcct-gaagtagcgtatgaggttgcttgaaagtagcagtcaataatcactgatgtcc |
404 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
36268767 |
atgttttctttgggttggggagtgaatgacgaggcttaaaagtagcgtatgaggttgcttgaaagtagcaatcaataatcagtgatgtcc |
36268678 |
T |
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