View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7008_low_4 (Length: 301)
Name: NF7008_low_4
Description: NF7008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7008_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 33866033 - 33865743
Alignment:
| Q |
1 |
ttccatctctggtatcagaagcaccaactctcttgacaaatatctgagcttttctattcttaaaggaagagctaaacgtagtgattttcagtttattatt |
100 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33866033 |
ttccatctctggtgtcaaaagcaccaactctcttgacaaatatctaggcttttctattcttaaaggaagagctaaacgtagtgattttcagtttattatt |
33865934 |
T |
|
| Q |
101 |
gaaaaaatgcaatccaggcttgcttcttggaaacataagttgttaaataaaccaagcagggtgactctagcatcttctctactttcctccacctgcaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33865933 |
gaaaaaatgcaatccaggcttgcttcttggaaacataagttgttaaataaaccaagcagggtgactctagcatcttctctactttcctccacccgcaatt |
33865834 |
T |
|
| Q |
201 |
tcatttagagggataataataacaaaggtattcatcttgttggatggnnnnnnntatctcagcctaaacagcttggcgaccttgggttcat |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33865833 |
tcatttagagggataataataacaaaggtattcatcttgttggatgggaaaaaatatctcagcctaaacagcttggcgaccttgggttcat |
33865743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 12645712 - 12645590
Alignment:
| Q |
11 |
ggtatcagaagcaccaactctcttgacaaatatctgagcttttctattcttaaaggaagagctaaacgtagtgattttcagtttattattgaaaaaatgc |
110 |
Q |
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||||| |||||||| | |||||| || |||||| || ||||| |||| |||||| | ||||| ||| | |||||||| | ||||| ||||| ||||||| |
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| T |
12645712 |
ggtattagaagcacgacctctctggataaatatttgggctttcctatccttaaatggagagcaaaaagaagtgatttcctttttatcattgacaaaatgc |
12645613 |
T |
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| Q |
111 |
aatccaggcttgcttcttggaaa |
133 |
Q |
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|||| || ||||||||||||||| |
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| T |
12645612 |
aatcaagtcttgcttcttggaaa |
12645590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 18092031 - 18091840
Alignment:
| Q |
1 |
ttccatctctggtatcagaagcaccaactctcttgacaaatatctgagcttttctattcttaaaggaagagctaaacgtagtgattttcagtttattatt |
100 |
Q |
| |
|
|||||| | |||||| | ||||| | ||||||||||||||||||| ||||| |||||| || ||||| |||||||| ||| |||| || ||||||||| |
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| T |
18092031 |
ttccatttatggtattaaaagcatcgactctcttgacaaatatcttggctttcttattctcaagggaagggctaaacgaagttatttccattttattatt |
18091932 |
T |
|
| Q |
101 |
-gaaaaaatgcaatccaggcttgcttcttggaaacataagttgttaaataaaccaagcagggtgactctagcatcttctctactttcctcca |
191 |
Q |
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|||||| |||| || || |||| |||||| |||||| || ||||||| || | || |||||||| ||||||||| | || ||||||| |
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| T |
18091931 |
aaaaaaaaaacaatgcatactggctttttggaagcataagatgctaaataagacaggaagagtgactcttgcatcttctgttctctcctcca |
18091840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 32874201 - 32874012
Alignment:
| Q |
1 |
ttccatctctggtatcagaagcaccaactctcttgacaaatatctgagcttttctattcttaaaggaagagctaaacgtagtgattttcagtttattatt |
100 |
Q |
| |
|
||||||| |||| ||||||||||| | |||| ||||||||||| || |||| ||||||| |||||||| ||||| |||||||| |||| ||||| ||| |
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| T |
32874201 |
ttccatcactggcatcagaagcactacctcttttgacaaatatgtg-gcttccctattctaaaaggaagggctaagcgtagtgactttctttttatcatt |
32874103 |
T |
|
| Q |
101 |
gaaaaaatgcaatccaggcttgcttcttggaaacataagttgttaaataaaccaagcagggtgactctagcatcttctctactttcctcca |
191 |
Q |
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|| ||||||||||||| ||||||||||| ||||||| |||||| ||||||||| | || |||||||||||||| | | | |||||||||| |
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| T |
32874102 |
gagaaaatgcaatccatacttgcttcttgaaaacataggttgttgaataaaccaggtagagtgactctagcatcatatgttctttcctcca |
32874012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 27153650 - 27153840
Alignment:
| Q |
1 |
ttccatctctggtatcagaagcaccaactctcttgacaaatatctgagcttttctattcttaaaggaagagctaaacgtagtgattttcagtttattatt |
100 |
Q |
| |
|
|||||||| |||||| |||||||| ||||| || |||||| || |||| | ||||| || || |||||||| || | ||| || || ||||||||| |
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| T |
27153650 |
ttccatctatggtattagaagcacatcatctctggataaatatttggcctttcccattctaaaggggagagctaagcgcaatgacttccattttattatt |
27153749 |
T |
|
| Q |
101 |
gaaaaaatgcaatccaggcttgcttcttggaaacataagttgttaaataaaccaagcagggtgactctagcatcttctctactttcctcca |
191 |
Q |
| |
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|||||| |||||||||| | ||| |||||||| || | |||||||||||||||| | || ||||||| ||||||||| | |||||||||| |
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| T |
27153750 |
gaaaaattgcaatccagacctgcctcttggaagcacaggttgttaaataaaccaggaagtatgactcttgcatcttctgttctttcctcca |
27153840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 27781373 - 27781222
Alignment:
| Q |
2 |
tccatctctggtatcagaagcaccaactctcttgacaaatatctgagcttttctattcttaaaggaagagctaaacgtagtgattttcagtttattattg |
101 |
Q |
| |
|
||||||| ||||||| ||||||||| ||||||||||||||| || | ||| | || || ||||| || ||||||| ||||| ||||| ||| |||||| |
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| T |
27781373 |
tccatctttggtatctgaagcaccacatctcttgacaaatatttgggttttccaatactcaaaggccgacctaaacgaagtgactttcattttgttattg |
27781274 |
T |
|
| Q |
102 |
aaaaaatgcaatccaggcttgcttcttggaaacataagttgttaaataaacc |
153 |
Q |
| |
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| |||||||| | | ||||||| |||||| | || |||||||||||||| |
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| T |
27781273 |
acaaaatgcatactcgtcttgcttattggaagaacaaattgttaaataaacc |
27781222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 24181386 - 24181340
Alignment:
| Q |
191 |
acctgcaatttcatttagagggataataataacaaaggtattcatct |
237 |
Q |
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|||||||||||||||| ||| ||||||||||||||| || ||||||| |
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| T |
24181386 |
acctgcaatttcatttggagagataataataacaaatgtgttcatct |
24181340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 46784137 - 46784078
Alignment:
| Q |
80 |
agtgattttcagtttattattgaaaaaatgcaatccaggcttgcttcttggaaacataag |
139 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||| | || ||||||||||||||| ||||| |
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|
| T |
46784137 |
agtgattttaattttattattgagaaaatgcaaacgagacttgcttcttggaaatataag |
46784078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 24132928 - 24132834
Alignment:
| Q |
59 |
cttaaaggaagagctaaacgtagtgattttcagtttattattgaaaaaatgcaatccaggcttgcttcttggaaacataagttgttaaataaacc |
153 |
Q |
| |
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|||||||||||||| || | |||||||| | ||||||||||||||||||||| | ||| | || ||||||||| | | ||||||||| ||||| |
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| T |
24132928 |
cttaaaggaagagcaaagagaagtgatttgctttttattattgaaaaaatgcaaacaaggttagcatcttggaaaaacaggttgttaaacaaacc |
24132834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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