View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7009_high_1 (Length: 939)
Name: NF7009_high_1
Description: NF7009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7009_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 461 - 926
Target Start/End: Original strand, 35380 - 35845
Alignment:
| Q |
461 |
gccatccatctcaacaatattttcttttttctttcagccagcacgttaactggctgccattttgctgttaccgctctcgttggtatactctccaatgcta |
560 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35380 |
gccatccatctcaacaatattttcttttttctttcagccagcacgttaactggctgccattttgctgttaccgctctcgttggtatactctccaatgcta |
35479 |
T |
|
| Q |
561 |
ccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatggtcgccaatttgtctatcactgccatgaattttagcctaat |
660 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35480 |
ccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatggtcgccaatttgtctatcactgccatgaattttagcctaat |
35579 |
T |
|
| Q |
661 |
gctaaactctgttggattctaccaagtattattctttcgttctttctttattcatcaactactttcattcagtttttatatgtattttgtaaggaccttc |
760 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35580 |
gctaaactctgttggattctaccaagtatttttctttcgttctttctttattcatcaactactttcattcagtttttatatgtattttgtaaggaccttc |
35679 |
T |
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| Q |
761 |
atacttggataacaacccatatgatatacacctaggatataaagttgttaattataaccttttatcacttgattgaaatcacttgtccctttttgtctcc |
860 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35680 |
atacttggataacaacccatatgatatacacctaggatataaagttgttaattataaccttttatcacttgattgaaatcacttgtccctttttgtctcc |
35779 |
T |
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| Q |
861 |
tttcatgtctattcttttgaaaaatgacaatttgtcacattgttttcaaactcgtatgttcatctc |
926 |
Q |
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| T |
35780 |
tttcatgtctattcttttgaaaaatgacaatttgtgacattgttttcaaactcgtatgttcatctc |
35845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 37 - 445
Target Start/End: Original strand, 34953 - 35356
Alignment:
| Q |
37 |
ttctaattaataatcttgtctaaaaagaaaagaagaaatctttgttttgatcccaatcacataaacaattaaaggtagatttgattggattggatgcatt |
136 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34953 |
ttctaattaataatcttgtctaaaaagaaaagaagaaatctttgttttgatcccaatcacataaacaattaaaggtagatttgatt-----ggatgcatt |
35047 |
T |
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| Q |
137 |
tgcagagaaacaatgcatgcgtgctgtcgactatttcttagatccatctagccaagggggaggaggaggagcggttatccttcaaattgattaatgttga |
236 |
Q |
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| T |
35048 |
tgcagagaaacaatgcatgcgtgctgtcgactatttcttagatccatctagccaagggggaggaggaggagcggttatccttcaaattgattaatgttgt |
35147 |
T |
|
| Q |
237 |
tgttgttattattattatagatagagagatataatggagaatgtagtagtaaagaaaaaagcatctttatctaatgttggagcatgggggatgaacattg |
336 |
Q |
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| T |
35148 |
tgttgttattattattatagatagagagatataatggagaatgtagtagtaaagaaaaaagcatctttatctaatgttggagcatgggggatgaacattg |
35247 |
T |
|
| Q |
337 |
tcagctccgttggaattatcatcgccaacaaacaactcatgtccaacaatggctatgttttcacttttggtcagccaccttctctcacacattcattcat |
436 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35248 |
tcagctccgttggaattatcatcgctaacaaacaactcatgtccaacaatggctatgttttcacttttggtcagccaccttctctcacacattcattcat |
35347 |
T |
|
| Q |
437 |
tgttgatgt |
445 |
Q |
| |
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||||||||| |
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| T |
35348 |
tgttgatgt |
35356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 313 - 403
Target Start/End: Complemental strand, 8677533 - 8677443
Alignment:
| Q |
313 |
ttggagcatgggggatgaacattgtcagctccgttggaattatcatcgccaacaaacaactcatgtccaacaatggctatgttttcacttt |
403 |
Q |
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||||||||||||| |||||| |||| || ||||||||||||||||| || || ||||| || ||||||||||||||||||| ||||||||| |
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| T |
8677533 |
ttggagcatggggtatgaacgttgtgagttccgttggaattatcatggctaataaacagcttatgtccaacaatggctatgctttcacttt |
8677443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 521 - 689
Target Start/End: Complemental strand, 8677325 - 8677160
Alignment:
| Q |
521 |
tttgctgttaccgctctcgttggtatactctccaatgctaccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatgg |
620 |
Q |
| |
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||||||||||| ||||| || ||| | |||| |||||||||||||| || |||| |||||||| ||| ||||||||||| ||||||||||| | |
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| T |
8677325 |
tttgctgttactgctcttgtcggtctcgtctcaaatgctaccggttattctgcttct---aagcatgttcctttgtgggagcttatttggttctctgctg |
8677229 |
T |
|
| Q |
621 |
tcgccaatttgtctatcactgccatgaattttagcctaatgctaaactctgttggattctaccaagtat |
689 |
Q |
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| |||||| | |||||||| | ||||| || ||||| ||||| || || ||||||||||||||||||| |
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| T |
8677228 |
ttgccaatatatctatcaccgggatgaacttgagcctcatgctcaattccgttggattctaccaagtat |
8677160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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