View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7009_high_13 (Length: 301)
Name: NF7009_high_13
Description: NF7009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7009_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 144 - 292
Target Start/End: Original strand, 20361244 - 20361392
Alignment:
| Q |
144 |
aagaagattctgagtatagtgatgatgaggaattagggcttatgtatgagaacgaccctcgaccctttatgtatacgaggcgttctgatggtcaagtgtt |
243 |
Q |
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| T |
20361244 |
aagaagattctgagtatagtgatgatgaggaattagggcttatgtatgagaacgaccctcgaccatttatgtatacgaggcgttctgatggtcaagtgtt |
20361343 |
T |
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| Q |
244 |
tatgaacaaggcttggttggatcgtgagactaaagttcgtgagtataat |
292 |
Q |
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| T |
20361344 |
tatgaacaaggcttggttggatcgtgagactaaagttcgtgagtataat |
20361392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 292
Target Start/End: Original strand, 32194457 - 32194611
Alignment:
| Q |
141 |
aagaagaagattctgagtatagtgatgatgaggaattagggcttatgtatgagaacga---ccctcgaccctttatgtatacgaggcgttctgatggtca |
237 |
Q |
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| T |
32194457 |
aagaagaagattctgagtatagtgattatgaggaatactggtccaagtatgagaatgaggacagtaaaccatttatgtataagcggcgttctgatggtta |
32194556 |
T |
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| Q |
238 |
agtgtttatgaacaaggcttggttggatcgtgagactaaagttcgtgagtataat |
292 |
Q |
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| T |
32194557 |
tgtgtttaagaacaaggcttggttggatggtgaggctaaagttggtgagtataat |
32194611 |
T |
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