View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7009_high_15 (Length: 282)
Name: NF7009_high_15
Description: NF7009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7009_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 35753727 - 35753618
Alignment:
| Q |
1 |
tgacgattctaaatttctaattggagaaaggaatgttgtgtggcggttgaacgttaatatccgggaattatggttaactgtttgataaaacataaactca |
100 |
Q |
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| T |
35753727 |
tgacgattctaaatttctaatgggagaaaggaatgttgtgtggcggttgaatgttaatatccgggaattatggttaactgtttgataaaacacaaactca |
35753628 |
T |
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| Q |
101 |
atatcagtag |
110 |
Q |
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| T |
35753627 |
aaatcagtag |
35753618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 35753245 - 35753179
Alignment:
| Q |
216 |
tcgttagagacatgagtattcttgacacttgattatagtaatatttgtaggttatgtgtgtttgtct |
282 |
Q |
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| T |
35753245 |
tcgttagagatatgagtattcttgacacttgattatagtaatatttgtaggttatgtgtgtttgtct |
35753179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 5814610 - 5814655
Alignment:
| Q |
221 |
agagacatgagtattcttgacacttgattatagtaatatttgtagg |
266 |
Q |
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| T |
5814610 |
agagacatgagtattctggagacttgaatatagtcatatttgtagg |
5814655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 17767416 - 17767372
Alignment:
| Q |
222 |
gagacatgagtattcttgacacttgattatagtaatatttgtagg |
266 |
Q |
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| T |
17767416 |
gagacatgagtattattgagacttgaatatagtcatatttgtagg |
17767372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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