View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7009_high_8 (Length: 390)
Name: NF7009_high_8
Description: NF7009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7009_high_8 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 10373738 - 10373375
Alignment:
| Q |
19 |
attctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10373738 |
attctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgga |
10373639 |
T |
|
| Q |
119 |
actcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttcctt |
218 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||| ||||||||||||||||| |
|
|
| T |
10373638 |
actcgattctctttcttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgaaattagatactgtgagaatttatccttcctt |
10373539 |
T |
|
| Q |
219 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctg |
318 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| | ||| |||||| | || ||| | | |||||| |||||||||||||||||||||||||| |
|
|
| T |
10373538 |
cctcttgaaatgtggagcaattacacatcacttgtgtggctttatttatatcgtagctgtgatt---cacttatatcctttccacttgatggtttccctg |
10373442 |
T |
|
| Q |
319 |
cgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtccttc |
385 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10373441 |
tcctccaaacacttatgatactgaattgtaggaatctggattccatttgtatttcagaaagtccttc |
10373375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 10262874 - 10263231
Alignment:
| Q |
19 |
attctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
10262874 |
attctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtctaacacacttgaa |
10262973 |
T |
|
| Q |
119 |
actcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttcctt |
218 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
10262974 |
actcagttctcttccttctctcactacatttccctcaagtggtctacccacttcattgcaatcacttgaaattgtaaattgtgagaatttatccttcctt |
10263073 |
T |
|
| Q |
219 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||| | || ||| | | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
10263074 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttgagttaaatcgtagctgtgatt---cacttacatcctttccactcgatggtttccctg |
10263170 |
T |
|
| Q |
319 |
cgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaag |
379 |
Q |
| |
|
| |||||||||||| |||| || | ||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
10263171 |
ccctccaaacacttgacatatataagtgtagaagtctggattccatttatattttagaaag |
10263231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 9841031 - 9841388
Alignment:
| Q |
19 |
attctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgga |
118 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||| | |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9841031 |
attctccatgtatgatgcaagatgtagtgattgaaaagtgtgttaaactattagttgttccaaaattgattctgagaagcacttgtcttacacacttgag |
9841130 |
T |
|
| Q |
119 |
actcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttcctt |
218 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||||||||| |
|
|
| T |
9841131 |
actcgattctctttcttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttcatattcgtagttgtgagaatttatccttccta |
9841230 |
T |
|
| Q |
219 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| | || ||| | |||||||||||||| ||||||||||||||||||| |
|
|
| T |
9841231 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcagttatggtggagctgt---gatacacttacatccttcccacttgatggtttccctg |
9841327 |
T |
|
| Q |
319 |
cgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaag |
379 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
9841328 |
cgctccaaacacttaccatacttgattgtaggagtctagattccatttatatttcagaaag |
9841388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 10129098 - 10129455
Alignment:
| Q |
19 |
attctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgga |
118 |
Q |
| |
|
|||||||||||||||||||| | |||| |||| | ||| |||| |||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10129098 |
attctccgtgtatgatgcaacatgtagcgattcacaactgttctaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgag |
10129197 |
T |
|
| Q |
119 |
actcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttcctt |
218 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
10129198 |
actctattctctttcttctctcactgcatttccctcaagtggactacccacttcattgcaatcacttcatattgaaaaatgtgagaatttatccttccta |
10129297 |
T |
|
| Q |
219 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||| |||| |||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
10129298 |
cctcctgaaacgtggagcaattacacatcacttgtgagtattgatttacggagtagttgt---gatgcacttacatcctttccacttgatggtttccctg |
10129394 |
T |
|
| Q |
319 |
cgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaag |
379 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10129395 |
cgctccaaacacttaccatacataattgtaggagtctggattccatttatatttcagaaag |
10129455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 78 - 385
Target Start/End: Original strand, 10665698 - 10666002
Alignment:
| Q |
78 |
ccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgc |
177 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10665698 |
ccaaaattgattatgagaagcacttgtcttacacacttggcactctattcactttcttctctcactgcatttccctcaagtggtctacccacttcattgc |
10665797 |
T |
|
| Q |
178 |
aatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttg |
277 |
Q |
| |
|
|||||||| |||||| || |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
10665798 |
aatcacttaatattttgtggtgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgcgtctagatttatgtcaaagttg |
10665897 |
T |
|
| Q |
278 |
taagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaa |
377 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||| |||| |
|
|
| T |
10665898 |
t---gatgcacttacatcctttccacttgatggtttccctgcgctccaaacactttggatacagaattgtaggagtctggtttccatttgtattttagaa |
10665994 |
T |
|
| Q |
378 |
agtccttc |
385 |
Q |
| |
|
|||||||| |
|
|
| T |
10665995 |
agtccttc |
10666002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 10519658 - 10520015
Alignment:
| Q |
19 |
attctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgga |
118 |
Q |
| |
|
||||||| |||||||||||||| |||| ||| | ||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10519658 |
attctccttgtatgatgcaagatgtagagattaaaaagtgtgttaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttggg |
10519757 |
T |
|
| Q |
119 |
actcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttcctt |
218 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||| |
|
|
| T |
10519758 |
actcgattctctttcttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttaatattcaatgttgtgagaatttatccttcctt |
10519857 |
T |
|
| Q |
219 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctg |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| | || | | || ||| | |||||||||||||||||||| ||||||||||||| |
|
|
| T |
10519858 |
cctcctgaaacgtggatcaattacacatcacttgtgagtcttaagttctatcgtagctgt---gatacacttacatcctttccactcgatggtttccctg |
10519954 |
T |
|
| Q |
319 |
cgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaag |
379 |
Q |
| |
|
||||||||||||||| |||| ||| || ||||||||||||||||||| |||||||||||| |
|
|
| T |
10519955 |
cgctccaaacacttaccatatgtgagtgcaggagtctggattccatttatatttcagaaag |
10520015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 10431937 - 10431580
Alignment:
| Q |
19 |
attctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgga |
118 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||| | ||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10431937 |
attctccgtgtatgatgcaacatgtagtgattgaaaactgtgttaagctattagttgtgccaaaattgattctgagaagcacttgtcttacacacttgag |
10431838 |
T |
|
| Q |
119 |
actcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttcctt |
218 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
10431837 |
actcgattctctttcttctctcactgcatttccatcaagtggtctacccacttcattgcaatcacttgaaattgaaaaatgtgagaatttatccttccta |
10431738 |
T |
|
| Q |
219 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| | | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
10431737 |
cctcctgaaacgtggagcaattacacatcacttgtcagtctttatttatggagcagttgtgatt---cacttacatcctttccactcgatggtttccctg |
10431641 |
T |
|
| Q |
319 |
cgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaag |
379 |
Q |
| |
|
| |||||| |||| |||| | |||| || |||||||||||||||| |||||||||||| |
|
|
| T |
10431640 |
ccctccaattacttgacatatttaattgcagaagtctggattccatttatatttcagaaag |
10431580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 10034176 - 10034533
Alignment:
| Q |
19 |
attctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgga |
118 |
Q |
| |
|
|||||||||||||||||||| | |||| |||| | ||| |||| |||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10034176 |
attctccgtgtatgatgcaacatgtagcgattcacaactgttctaagctattagctgtgccaaaattgattttgagaagcacttgtcttacacacttgga |
10034275 |
T |
|
| Q |
119 |
actcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttcctt |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
10034276 |
actcaattctctttcttctctcactgcatttccctcaagtggactacccacttcattgcaatcacttcatattgtaaaatgtgagaatttatccttccta |
10034375 |
T |
|
| Q |
219 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
10034376 |
cctcctgaaacgtggagcaattacacatcacttgtgagtctttatttaattcatagttgt---gatgcacttacatcctttccacttgatggtttccctg |
10034472 |
T |
|
| Q |
319 |
cgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaag |
379 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
10034473 |
tcctccaaacacttcagatatggaattgtaggagtctggtttccatttatatttcagaaag |
10034533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 73 - 379
Target Start/End: Complemental strand, 10361643 - 10361340
Alignment:
| Q |
73 |
ctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttc |
172 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||| |||| | |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10361643 |
ctgtgccaaaattgattctgagaagcacttgtcttacactcttgggactcggtaatctttcttctctcactgcatttccctcaagtggtctacccacttc |
10361544 |
T |
|
| Q |
173 |
attgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggaga |
272 |
Q |
| |
|
||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
10361543 |
attgcaatcacttcatattgaaaattgtgagaatttatccttcctacctcctgaaacgtggagcaattacacatcacttgtgactctacatttagatcat |
10361444 |
T |
|
| Q |
273 |
agttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttgtattt |
372 |
Q |
| |
|
|| ||| | ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
10361443 |
agctgtggtt---cacttacatcctttccactcgatggtttccctgcgctccgaacacttaccatacgtgattgtaggagtctggattccatttatattt |
10361347 |
T |
|
| Q |
373 |
cagaaag |
379 |
Q |
| |
|
||||||| |
|
|
| T |
10361346 |
cagaaag |
10361340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 9851912 - 9852269
Alignment:
| Q |
19 |
attctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgga |
118 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| | ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9851912 |
attctccgtgtatgatgcaagatgtagagattgaaaagtgtgttaagctattagctgtgccaaaattgattatgagaagcacttgtcttacacacttgag |
9852011 |
T |
|
| Q |
119 |
actcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttcctt |
218 |
Q |
| |
|
|||| |||| ||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
9852012 |
actcgattcactttcttctctcaatgcatttccatcaagtggtctacccacttcattgcaatcacttgatattgaaaattgtgagaatttatccttccta |
9852111 |
T |
|
| Q |
219 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctg |
318 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||| || | | || ||| | | |||||| |||||||||||| ||||||||||||| |
|
|
| T |
9852112 |
cctcctgaaacatggagcaactacacatcacttgtgagtcttcggttctatcgtagctgtgatt---cacttaaatcctttccactcgatggtttccctg |
9852208 |
T |
|
| Q |
319 |
cgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaag |
379 |
Q |
| |
|
||||||||||||| ||| ||||||| || |||||||||||||||| ||||| |||||| |
|
|
| T |
9852209 |
tgctccaaacacttgacattgatgattggagaagtctggattccatttatattttagaaag |
9852269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 78 - 378
Target Start/End: Complemental strand, 11779819 - 11779522
Alignment:
| Q |
78 |
ccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgc |
177 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11779819 |
ccaaaattgattttgagaagcatttgtcttacatacttgagactccattctctttcttctctcactgcatttccctcaagtggtctacccacttcattgc |
11779720 |
T |
|
| Q |
178 |
aatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttg |
277 |
Q |
| |
|
|||||||| ||||| ||| |||| |||||||| || ||| |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
11779719 |
aatcacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagcaattacacttcacttgtgagtctttatttatggagtagttg |
11779620 |
T |
|
| Q |
278 |
taagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaa |
377 |
Q |
| |
|
| | ||||||||||||| ||||||||||||||||||| ||||||||||||| | || |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
11779619 |
t---gatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgtaggagtctggattccatttatattttagaa |
11779523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 67 - 332
Target Start/End: Original strand, 10582832 - 10583094
Alignment:
| Q |
67 |
tattagctgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacc |
166 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
10582832 |
tattagctgtgccaaaattgattctgagaagcacttgtcttacacacttgagactctattctctttcttctctcactacatttccctcaagtggtctacc |
10582931 |
T |
|
| Q |
167 |
cacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcattta |
266 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | || |
|
|
| T |
10582932 |
cacttcattgcaatcacttcatatcgaaaattgtgagaatttatccttcctacctcctgaaacgtggagcaactacacatcacttgtgagtctttagttc |
10583031 |
T |
|
| Q |
267 |
tggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacactt |
332 |
Q |
| |
|
| | || ||| | | ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10583032 |
tatcgtagctgtgatt---cacttacatcctttccacttgatggtttccctgcgctccgaacactt |
10583094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 78 - 365
Target Start/End: Original strand, 11771466 - 11771750
Alignment:
| Q |
78 |
ccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgc |
177 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11771466 |
ccaaaattgattttgagaagcacttgtcttacatacttgagactccattctctttcttctctcactgcatttcccccaagtggtctacccacttcattgc |
11771565 |
T |
|
| Q |
178 |
aatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttg |
277 |
Q |
| |
|
|| |||| ||||| ||| |||| |||||||| || ||| |||||||||||||| ||||||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
11771566 |
aaatacttcatattaaagattgtgagaacttatcctttctaccttctgaaacgtggagctattacacttcacttgtgagtctttatttatggagtagttg |
11771665 |
T |
|
| Q |
278 |
taagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatt |
365 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||| || |||||| |||| ||| |||||| ||||||||||||||| |
|
|
| T |
11771666 |
t---gatgcacttacatcctttccacttgatggtttccctgcgctcaaatcacttaccatagatggttgtagtagtctggattccatt |
11771750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 10197849 - 10198192
Alignment:
| Q |
19 |
attctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgga |
118 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||| | |||| |||| |||||||| | |||||| |||||| ||||||||||||||| ||||||| | |
|
|
| T |
10197849 |
attctccgtgtatgatggaagatgtagtgattcgaaagtgtgctaagctattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaa |
10197948 |
T |
|
| Q |
119 |
actcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttcctt |
218 |
Q |
| |
|
|||| |||||||| | ||| || | ||||| ||||||||||||||||||||||||||||||||| |||| ||| | ||| ||||||||||||||| |
|
|
| T |
10197949 |
actctattctctttcatctatcgccgcattaccctcaagtggtctacccacttcattgcaatcaattgaaattgaattttgtttgaatttatccttccta |
10198048 |
T |
|
| Q |
219 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||| | || ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
10198049 |
cctcctgaaacgtggagcaattacacatcacttgtgagactttatttaagtcatagctgt---gatgcacttacatcctttccacttgatggtttccctg |
10198145 |
T |
|
| Q |
319 |
cgctccaaacacttatcatacatgattgtaggagtctggattccatt |
365 |
Q |
| |
|
||||| || |||||| |||| ||| |||||| ||||||||||||||| |
|
|
| T |
10198146 |
cgctcaaatcacttaccatagatggttgtagtagtctggattccatt |
10198192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 10090967 - 10091310
Alignment:
| Q |
19 |
attctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgga |
118 |
Q |
| |
|
||||||| ||||||||| |||| ||||| ||||| | |||| |||| |||||||| | |||||| |||||| ||||||||||||||| ||||||| | |
|
|
| T |
10090967 |
attctccatgtatgatggaagatgtagtgattcgaaagtgtgctaagctattagctatgccaaaaatgattccaagaagcacttgtcttcaacacttgaa |
10091066 |
T |
|
| Q |
119 |
actcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttcctt |
218 |
Q |
| |
|
|||| |||||||| | ||| || | ||||| ||||||||||||||||||||||||||||||||| |||| ||| | ||| ||||||||||||||| |
|
|
| T |
10091067 |
actctattctctttcatctatcgccgcattaccctcaagtggtctacccacttcattgcaatcaattgaaattgaattttgtttgaatttatccttccta |
10091166 |
T |
|
| Q |
219 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||| | || ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
10091167 |
cctcctgaaacgtggagcaattacacatcacttgtgagactttatttaagtcatagctgt---gatgcacttacatcctttccacttgatggtttccctg |
10091263 |
T |
|
| Q |
319 |
cgctccaaacacttatcatacatgattgtaggagtctggattccatt |
365 |
Q |
| |
|
||||| || |||||| |||| ||| |||||| ||||||||||||||| |
|
|
| T |
10091264 |
cgctcaaatcacttaccatagatggttgtagtagtctggattccatt |
10091310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 21 - 384
Target Start/End: Original strand, 10502758 - 10503117
Alignment:
| Q |
21 |
tctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttggaac |
120 |
Q |
| |
|
||||| |||||||||||| | ||||| ||| || ||||||| | ||||| || |||||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
10502758 |
tctccatgtatgatgcaacatgtagtcatttgtaggtgtgttacgctattatctattccaaaaatgatt-tgagaagcacttgtcttcaacacttggaac |
10502856 |
T |
|
| Q |
121 |
tcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcc |
220 |
Q |
| |
|
|| || | |||| |||||||||| |||||| | ||||||||||||||| ||||| |||||| |||| |||| ||||||||||||| ||||| |
|
|
| T |
10502857 |
tctatgatattccatctctcactgtgtttcccaaagatggtctacccacttctttgcagtcacttagtattaaaaggtgtgagaatttatcctttcttcc |
10502956 |
T |
|
| Q |
221 |
tcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctgcg |
320 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||| |||||||||| || ||| | ||| ||||||||||||||||||||||||||||| |
|
|
| T |
10502957 |
tgctgaaacgtggagcaattacacattgcttgtgagtcttgatttatggagtagctgt---gatggactaacatcctttccacttgatggtttccctgca |
10503053 |
T |
|
| Q |
321 |
ctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtcctt |
384 |
Q |
| |
|
||||||| ||||| ||| | | ||||||| | |||||||||||| || || | ||||||||| |
|
|
| T |
10503054 |
ctccaaagacttaacattagtaactgtaggaatttggattccatttttactttaaaaagtcctt |
10503117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 78 - 383
Target Start/End: Complemental strand, 13853298 - 13852996
Alignment:
| Q |
78 |
ccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgc |
177 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||| ||||| || | |||| |||||||||| |||||| ||||||||||| || ||| |||||| |
|
|
| T |
13853298 |
ccaaaattgattttgagaagcacttttcttcaacacttgaaactctatgatattccatctctcactgtatttccgtcaagtggtctgccaactccattgc |
13853199 |
T |
|
| Q |
178 |
aatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttg |
277 |
Q |
| |
|
|||||||||| || ||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||||| |||| |||| || || |
|
|
| T |
13853198 |
aatcacttgaaatagaaaaatgtgagaatttatcattccttcctcctgaaacatggagcaattacacatcgcttgcgagtcttactttacggagtagctg |
13853099 |
T |
|
| Q |
278 |
taagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaa |
377 |
Q |
| |
|
| | ||||||||||||| | |||||||||||||||||| ||||||| |||| ||| ||| ||||||| ||||||||||||| ||||| |||| |
|
|
| T |
13853098 |
t---gatgcacttacatccttccaacttgatggtttccctgcactccaaagacttcggataagtgagtgtaggaatctggattccattaatattttagaa |
13853002 |
T |
|
| Q |
378 |
agtcct |
383 |
Q |
| |
|
|||||| |
|
|
| T |
13853001 |
agtcct |
13852996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 254
Target Start/End: Complemental strand, 10967519 - 10967364
Alignment:
| Q |
99 |
acttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgt |
198 |
Q |
| |
|
||||||||| ||||||| |||||| || | || | ||||||||||||||| | || | ||| || |||||||||||| | ||||||||||||| | |
|
|
| T |
10967519 |
acttgtcttcaacacttgcaactcatttatatttcctctctcactgcattttcatctaatggacttcccacttcattgaagtcacttgatatttccgact |
10967420 |
T |
|
| Q |
199 |
gtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtg |
254 |
Q |
| |
|
||||||||||| | ||| | ||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
10967419 |
gtaagaatttagcattcttgcctccggaaatgtggagcaattacacatcacttgtg |
10967364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 383
Target Start/End: Original strand, 10530892 - 10531195
Alignment:
| Q |
74 |
tgttccaaaattgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttca |
173 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||||||| ||||| ||| ||| || |||||| |||||| ||||||| | |||||||||||||||| |
|
|
| T |
10530892 |
tgttcctaaaatgattatgagaagcacttgtcttctacactcggagctctatggtcttccc---ctcactacatttccgaagaatggtctacccacttca |
10530988 |
T |
|
| Q |
174 |
ttgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaa |
273 |
Q |
| |
|
||||| |||||| |||| ||| |||| ||| | ||| | ||||||||||||||||||| |||||||| |||| ||||||| ||||||||| | |
|
|
| T |
10530989 |
ttgcagtcactttgtattgataattgtgagaagttagcattcatgcctcctgaaacgtggagcagatacacatcgcttgagagtcttattttatggagta |
10531088 |
T |
|
| Q |
274 |
gttgtaagtacacacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttc |
373 |
Q |
| |
|
| ||| | ||||||||||||| | |||||||||||||||||| |||| || |||| ||| | |||||||||| ||||||| ||| |||||| |
|
|
| T |
10531089 |
gctgt---gatgcacttacatccttccaacttgatggtttccctgcactccgaatactttacatttgtttttgtaggagtatggattcggtttttatttc |
10531185 |
T |
|
| Q |
374 |
agaaagtcct |
383 |
Q |
| |
|
|||||||||| |
|
|
| T |
10531186 |
agaaagtcct |
10531195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 250
Target Start/End: Complemental strand, 11244308 - 11244188
Alignment:
| Q |
130 |
ttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttccttcctcctgaaac |
229 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||||||||||||| |||||| ||||| ||||| | ||| | | ||| | ||||| ||||||||||| |
|
|
| T |
11244308 |
ttccatctctcactgcatttcctacaaatggtctacccacttctttgcaaacacttcatattcgcaattgtgacagcttaacattcctacctcctgaaac |
11244209 |
T |
|
| Q |
230 |
gtggagcaattacacatcact |
250 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
11244208 |
gtggagcaattacacatcact |
11244188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 382
Target Start/End: Original strand, 10679833 - 10679993
Alignment:
| Q |
219 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctg |
318 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||| ||||||||| || ||| | ||||||||||||| | ||||||||||||||||| |
|
|
| T |
10679833 |
cctcctgaaacgtggagcagatatacatcgcttgtgagtcttattttatggagtagctgt---gatgcacttacatccttccaacttgatggtttccctg |
10679929 |
T |
|
| Q |
319 |
cgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtcc |
382 |
Q |
| |
|
| |||| || |||| ||| | |||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
10679930 |
cactccgaatactttacatttgtttttgtaggagtatggattcagtttttatttcagaaagtcc |
10679993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 13397732 - 13397889
Alignment:
| Q |
98 |
cacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcg |
197 |
Q |
| |
|
|||||||||| ||||||||| |||| || | || | ||||||||||||||||| ||| |||||| |||||||| ||||| |||||| ||| | |
|
|
| T |
13397732 |
cacttgtcttcaacacttggatctcatttatatttcctctctcactgcatttccagcaaatggtcttcccacttcgttgcagtcacttcgtatagatgag |
13397831 |
T |
|
| Q |
198 |
tgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtga |
255 |
Q |
| |
|
||| |||||||| | ||| | | ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13397832 |
tgtcagaatttagcattcttgcgtcctgaaacatggagcaattacacatcacttgtga |
13397889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 10085732 - 10085797
Alignment:
| Q |
320 |
gctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtccttc |
385 |
Q |
| |
|
||||||||||||| ||||| |||||||||| || |||||||||||| ||||| |||||||||||| |
|
|
| T |
10085732 |
gctccaaacacttgacatacgtgattgtaggtgtttggattccatttttattttagaaagtccttc |
10085797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 10192652 - 10192717
Alignment:
| Q |
320 |
gctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtccttc |
385 |
Q |
| |
|
||||||||||||| ||||| |||||||||| || |||||||||||| ||||| |||||||||||| |
|
|
| T |
10192652 |
gctccaaacacttgacatacgtgattgtaggtgtttggattccatttttattttagaaagtccttc |
10192717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 11230137 - 11230092
Alignment:
| Q |
202 |
agaatttatccttccttcctcctgaaacgtggagcaattacacatc |
247 |
Q |
| |
|
|||||||||| || ||||||| ||| |||||||||||||||||||| |
|
|
| T |
11230137 |
agaatttatcgtttcttcctcttgatacgtggagcaattacacatc |
11230092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 55498 - 55135
Alignment:
| Q |
19 |
attctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgga |
118 |
Q |
| |
|
|||||||||||||||||||| | |||| |||| | ||| |||| |||||||||| |||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
55498 |
attctccgtgtatgatgcaacatgtagcgattcacaactgttctaagctattagctgtgccaaaattgattctgaaaagcacttgtcttacacacttgaa |
55399 |
T |
|
| Q |
119 |
actcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttcctt |
218 |
Q |
| |
|
|||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
55398 |
actccattcactttcttctctcactgcatttccctcaagtggactacccacttcattgcaatcacttcatattgaaaaatgtgagaatttatccttccta |
55299 |
T |
|
| Q |
219 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| || ||| |||||| | | ||||||||||||||||||||||||||||||||| |
|
|
| T |
55298 |
cctcctgaaacgtggagcaattacacatcacttgtcagtcttaatatatcatatagttgtgatt---cacttacatcctttccacttgatggtttccctg |
55202 |
T |
|
| Q |
319 |
cgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtccttc |
385 |
Q |
| |
|
| |||||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
55201 |
ccctccaaacacttgacataagtagatgtaggagtctggtttccatttgtatttcagaaagtccttc |
55135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 26909061 - 26909424
Alignment:
| Q |
19 |
attctccgtgtatgatgcaagaagtagttattcgtgaatgtgttaagttattagctgttccaaaattgattctgagaagcacttgtcttacacacttgga |
118 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||| | |||||| | |||||| | | ||||||||||||||||||||||| |||||| ||||||| | |
|
|
| T |
26909061 |
attctccctgtatgatgcaagatgtagtgattcaaaattgtgttgggctattaggtttgccaaaattgattctgagaagcacatgtcttcaacacttgaa |
26909160 |
T |
|
| Q |
119 |
actcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcacttgatatttggtcgtgtaagaatttatccttcctt |
218 |
Q |
| |
|
|||| |||||||| | ||| || | ||||| ||||||||||||||||||||||||||||||||| |||| ||| | ||| ||||||||||||||| |
|
|
| T |
26909161 |
actctattctctttcatctatcgccgcattaccctcaagtggtctacccacttcattgcaatcaattgaaattgaattttgtttgaatttatccttccta |
26909260 |
T |
|
| Q |
219 |
cctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttccacttgatggtttccctg |
318 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| || | |||| || ||| | ||||| ||| ||||| |||||||||||||||| |
|
|
| T |
26909261 |
cctcttgaaacctggagcaattacacatcacttgtgaacattgagttatatcatagctgtgatg---cacttgaatcatttccgcttgatggtttccctg |
26909357 |
T |
|
| Q |
319 |
cgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtccttc |
385 |
Q |
| |
|
| ||||||| |||| || | |||||||||||| |||||||||||| ||||||||||| |||||| |
|
|
| T |
26909358 |
ctctccaaagtcttaaaatttacgattgtaggagtgtggattccatttatatttcagaaactccttc |
26909424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 385
Target Start/End: Original strand, 11487385 - 11487565
Alignment:
| Q |
202 |
agaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggagaagttgtaagtacacacttacatcctttcc |
301 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| || |||||| ||| | |||| || || ||| | |||||||||||||||| |
|
|
| T |
11487385 |
agaatttatcattccttcctcctgaaacgtggagcaattacaagtctcttgtgtcgcttgagttatttagtagctgtgatg---cacttacatcctttcc |
11487481 |
T |
|
| Q |
302 |
acttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtccttc |
385 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | || ||||||||||| ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
11487482 |
acttgatggtttccctgcgctccaaagactaaaactatatgattgtaggtgtctggattccatttttattttagaaagtccttc |
11487565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 385
Target Start/End: Complemental strand, 44955291 - 44955192
Alignment:
| Q |
286 |
cacttacatcctttccacttgatggtttccctgcgctccaaacacttatcatacatgattgtaggagtctggattccatttgtatttcagaaagtccttc |
385 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||| |||||||| ||||| ||| || |||||||||||||||||| |||| |||| ||||||||||| |
|
|
| T |
44955291 |
cacttaaatcattcccacttgatggtttccctgtgctccaaagacttaacattagtggttgtaggagtctggattcaattttcattttggaaagtccttc |
44955192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 85 - 271
Target Start/End: Complemental strand, 17850756 - 17850570
Alignment:
| Q |
85 |
tgattctgagaagcacttgtcttacacacttggaactcaattctcttccttctctcactgcatttccctcaagtggtctacccacttcattgcaatcact |
184 |
Q |
| |
|
||||| |||| |||||||||||| ||||||| ||||||| | |||| ||||||||||||||||| | || || || |||||||||||| ||||| |
|
|
| T |
17850756 |
tgattatgaggagcacttgtcttcaacacttgacactcaatgatattccgtctctcactgcatttccgacggatgttcaactcacttcattgcagtcact |
17850657 |
T |
|
| Q |
185 |
tgatatttggtcgtgtaagaatttatccttccttcctcctgaaacgtggagcaattacacatcacttgtgagtcttcatttatggag |
271 |
Q |
| |
|
| ||||| | ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
17850656 |
tcatattagtatgtgtaagaatttatccttcatgcctcctgaaacgtggaacaattacacatcacttgcgagtcttgagttatggag |
17850570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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