View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7009_low_10 (Length: 386)
Name: NF7009_low_10
Description: NF7009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7009_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 7155270 - 7154925
Alignment:
| Q |
19 |
catttgactttatagaaaagcatgcaacatttttatcgccaatgcacaccacaataagacgtgcgatgaaaacgatataatcgtgtaattaatccaaggg |
118 |
Q |
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| T |
7155270 |
catttgactttatagaaaagcatgcaacatttttatcgccaatgcacaccacaataagacgtgcgatgaaaacgatataatcgtgtaattaatccaaggg |
7155171 |
T |
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| Q |
119 |
taggcttgtggacccaaacaacacaagataacaacacgtggatggtcaagatttcactaattattctctaggaccttataaattgatgtcacgtacatca |
218 |
Q |
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| T |
7155170 |
taggcttgtggacccaaacaacacaagataacaacacgtggatggtcaagatttcactaattattctctaggaccttataaattgatgtcacgtacatca |
7155071 |
T |
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| Q |
219 |
ttataagacatcaaattctattgaagataacatctaccaatcaaatattattctttgctttgcaagttgagtttgtgaatatgtctggctgtaaatgtgg |
318 |
Q |
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| T |
7155070 |
ttataagacatcaaattctattgaagataacatctaccaatcaaatattattctttgctttgcaagttgagtttgtgaatatgtctggctgtaaatgtgg |
7154971 |
T |
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| Q |
319 |
aagtagttgcaattgtggtgataactgcaagtaaggatcaagcacc |
364 |
Q |
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| T |
7154970 |
aagtagttgcaattgtggtgataactgcaagtaaggatcaagcacc |
7154925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 61 - 187
Target Start/End: Complemental strand, 7161327 - 7161201
Alignment:
| Q |
61 |
tgcacaccacaataagacgtgcgatgaaaacgatataatcgtgtaattaatccaagggtaggcttgtggacccaaacaacacaagataacaacacgtgga |
160 |
Q |
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| T |
7161327 |
tgcacccctcaataagacgtgcgatgaaaacgatgtctacgtggaaatagtccaatggtgggattgtggacccaagcaacacaagattacaacacgtgga |
7161228 |
T |
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| Q |
161 |
tggtcaagatttcactaattattctct |
187 |
Q |
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| T |
7161227 |
tggtcaagatttcactttttattctct |
7161201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 7161068 - 7161025
Alignment:
| Q |
314 |
tgtggaagtagttgcaattgtggtgataactgcaagtaaggatc |
357 |
Q |
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| T |
7161068 |
tgtggaagcagttgcaactgtggtgatagctgcaagtaaggatc |
7161025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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