View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7009_low_12 (Length: 320)
Name: NF7009_low_12
Description: NF7009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7009_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 38788403 - 38788686
Alignment:
| Q |
13 |
aatataacaaccaaagagaaaatctcaaccgtctaaaacaatgtacaagttaccttctnnnnnnntctaaacagtctaaaatatctgaatctaaaacaaa |
112 |
Q |
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| T |
38788403 |
aatataacaaccaaagagaaaatctcaaccgtctaaaacaatgtacaagttaccttctaaaaaaatctaaacaatctaaaatatctgaatctaaaacaaa |
38788502 |
T |
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| Q |
113 |
caccccatcacctacactatataataatatacggtagtgtgtttacttcacttcattctcaaaaacggttcgtgtctctttctctctaattcttccaata |
212 |
Q |
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| T |
38788503 |
taccccatcacctacactatataataacacacggtagtgtgtttacttcacttcattctcaaaaacggttcatatc----tctctctaactcttccaata |
38788598 |
T |
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| Q |
213 |
gattcttgatcttgtgcaaccatgcgtccaccggtaaagagagttgattacaaggtaggagataaagttgaagtatgcagcaaagaag |
300 |
Q |
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| T |
38788599 |
ggttcttgatcttgtgcaaccatgcgtccaccggtgaagagagttgattacaaggtaggagataaagttgaagtatgcagcaaagaag |
38788686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 38744015 - 38743721
Alignment:
| Q |
13 |
aatataacaaccaaagagaaaatctcaaccgtctaa-------aacaatgtacaagttaccttctnnnnnnntctaaacagtctaaaatatctgaatcta |
105 |
Q |
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| T |
38744015 |
aatataacaaccaaagagaaaatctcaaccgttcaatcacaataacaatgtacaagttaccttctaaaaaaatctaaaccgtctaaaatatctgaatctc |
38743916 |
T |
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| Q |
106 |
aaacaaacaccccatcacctacactatataataatatacggtagtgtgtttacttcacttcattctcaaaaa-cggttcgtgtctctttctctctaattc |
204 |
Q |
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| T |
38743915 |
aaacaaacaccccatcaactac-ctatataataatacacggtagtgtgtttacttcacttcatattcaaaaaacggttcgtgtctctttctctctaattc |
38743817 |
T |
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| Q |
205 |
ttccaatagattcttgatcttgtgcaaccatgcgtccaccggtaaagagagttgattacaaggtaggagataaagttgaagtatgcagcaaagaag |
300 |
Q |
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| T |
38743816 |
ttccgatagattcttgatcttgtgcaaccatgcgtccaccggtgaagagagttgattacaaggtaggagataaagtagaagtatgcagcaaagaag |
38743721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 211 - 298
Target Start/End: Original strand, 38782425 - 38782512
Alignment:
| Q |
211 |
tagattcttgatcttgtgcaaccatgcgtccaccggtaaagagagttgattacaaggtaggagataaagttgaagtatgcagcaaaga |
298 |
Q |
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| T |
38782425 |
tagattcttgatcttgtgcaatcatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcgaaga |
38782512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 30963226 - 30963137
Alignment:
| Q |
211 |
tagattcttgatcttgtgcaaccatgcgtccaccggtaaagagagttgattacaaggtaggagataaagttgaagtatgcagcaaagaag |
300 |
Q |
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| T |
30963226 |
tagattcttgatctattgcaaccatgcgtccaccaatgaagagagtggattacaaggtaggagataaagtagaagtatgtagtaaagaag |
30963137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 30897239 - 30897328
Alignment:
| Q |
211 |
tagattcttgatcttgtgcaaccatgcgtccaccggtaaagagagttgattacaaggtaggagataaagttgaagtatgcagcaaagaag |
300 |
Q |
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| T |
30897239 |
tagattcttgacattgttccaccatgcgtccaccaatgaggagagtggattacaaaataggagataaagtagaagtatgcagtaaagaag |
30897328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 24827620 - 24827583
Alignment:
| Q |
251 |
gagagttgattacaaggtaggagataaagttgaagtat |
288 |
Q |
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| T |
24827620 |
gagagttgattacaaggaaggagacaaagttgaagtat |
24827583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 2914550 - 2914628
Alignment:
| Q |
222 |
tcttgtgcaaccatgcgtccaccggtaaagagagttgattacaaggtaggagataaagttgaagtatgcagcaaagaag |
300 |
Q |
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| T |
2914550 |
tcttttgcaaacatgcgtccgccaacaaagagagtcgattacaaggtaggagacaaagtagaagtatgcagcaaagaag |
2914628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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