View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7009_low_15 (Length: 290)
Name: NF7009_low_15
Description: NF7009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7009_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 46875329 - 46875082
Alignment:
| Q |
13 |
acctgtgtggttcaaaacaaaggtacatcctactcctgctcatgggatacattagattttcttgccaatatgagatttgctttgcagacccttcaatttg |
112 |
Q |
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| T |
46875329 |
acctgtgtggttcaaaacaaaggtacatcctactcctgctcatgggatacattagattttcttgccaatatgagatttgctttgcagacccttcaatttg |
46875230 |
T |
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| Q |
113 |
cttaaaatcccctcatatttatctgattgtaactctcgattgcgcaaatcctatcaggagctacgatccagtcgttgtttttggacaggagcatattgaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46875229 |
cttaaaatcccctcatatttatctgattgtaactctcgattgcgcaaatcctatcaggagctacgatccagtcgttgtttttggacaggagcatattgaa |
46875130 |
T |
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| Q |
213 |
tcggtttatttcagaggttgagcaatccaccgggtgcatagagcaatc |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46875129 |
tcggtttatttcagaggttgagcaatccaccgggtgcatagagtaatc |
46875082 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 23895174 - 23895215
Alignment:
| Q |
218 |
ttatttcagaggttgagcaatccaccgggtgcatagagcaat |
259 |
Q |
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| T |
23895174 |
ttatttcagaggttgagcaatccacggggtgcatagagcaat |
23895215 |
T |
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