View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7009_low_2 (Length: 667)
Name: NF7009_low_2
Description: NF7009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7009_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 82 - 413
Target Start/End: Complemental strand, 12926275 - 12925954
Alignment:
| Q |
82 |
gacaagaagatcagaaatgtagttattagaagataaattactttcccttataaataaatacagataaatttcgtttttagaggtttgaattaatttcttt |
181 |
Q |
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| T |
12926275 |
gacaagaagatcagaaaagtagttattagaagataaattactttcccttataaataaatacagataaatttcgtttttagaggtttgaattaatttcttt |
12926176 |
T |
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| Q |
182 |
tagaggtgaattaaaaatcaattattatctcacaatattccagaacattcgggctataaatacagctgaaattgaaatccacaaatcgttgaacccgcca |
281 |
Q |
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| T |
12926175 |
tagaggtgaattaaaaatcaattattaactcacaatattc----------gggctataaatacagctgaaattgaaatccacaaatcgttgaacccgcca |
12926086 |
T |
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| Q |
282 |
aatgaaagagcaacaaacaccaaccaaactctctgcacctcgctccgcagagaatcgcaccgcaagatccaaaaactttccgtcgaagaaatccagaaag |
381 |
Q |
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| T |
12926085 |
aatgaaagagcaacaaacaccaaccaaactctctgcacctcgctccgcagagaatcgcaccgcaagatccaatgactttccgtcgaagaaatccagaaag |
12925986 |
T |
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| Q |
382 |
gcacgcacatccaccgattcctaaacttctca |
413 |
Q |
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| T |
12925985 |
gcacgcacattcaccgattcctaaacttctca |
12925954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 500 - 650
Target Start/End: Complemental strand, 12925874 - 12925724
Alignment:
| Q |
500 |
gatctcaaacaggagcgtgaattcttcatctgcttcgttttctgaagaatcggttgatttatcgctgatttctgagatcactgaagaaaatctcaacgaa |
599 |
Q |
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| T |
12925874 |
gatctcaaacaagagcgtgaattcttcatctgcttcgttttctgaagaatcggttgatttatcgctgatttctgagatcactgaagaaaatctcaacgaa |
12925775 |
T |
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| Q |
600 |
gatgtttcagtaagtgtaattctcagcatcgtattctctttcccttgtttc |
650 |
Q |
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| T |
12925774 |
gatgtttcagtaagtgtaattctcagcatcgtattctttttcccttgtttc |
12925724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12926360 - 12926314
Alignment:
| Q |
1 |
gtcgatgaacactccatagtaaatttcc--ttcttatatacttatcc |
45 |
Q |
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| T |
12926360 |
gtcgatgaacactccatagtaaatttccttttcttatatactcatcc |
12926314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 88 - 313
Target Start/End: Original strand, 30789517 - 30789739
Alignment:
| Q |
88 |
aagatcagaaatgtagttattagaagataaattactttcccttataaataaatacagataaatttcgtttttagaggtttgaattaattt--cttttaga |
185 |
Q |
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| T |
30789517 |
aagatcacaaaagtaattgttagaagataaattagtttccct---aaaaaaataccgataaatttcttttttagaggtttgaattaatttttcttttagg |
30789613 |
T |
|
| Q |
186 |
ggtgaattaaaaatcaattattatctcacaatattccagaacattcgggctataaatacagctgaaattgaaatccacaaatcgttgaacccgccaaatg |
285 |
Q |
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| T |
30789614 |
ggtgaattaaaaaaaaattatc--ctcacaatattagagaacattccagctataaatacagtcaaaattgaaatcagcaaaacgtttaaactgccaaacg |
30789711 |
T |
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| Q |
286 |
aaagagcaacaaacaccaaccaaactct |
313 |
Q |
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| T |
30789712 |
aaagagcaacaaacaccaaccaaactct |
30789739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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