View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7009_low_23 (Length: 228)
Name: NF7009_low_23
Description: NF7009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7009_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 5686151 - 5685954
Alignment:
| Q |
14 |
aatataaaggattaaggttggtctacttttaaaagaggtagaatatttaaatatataaaatatggtacaattttgtccaatataaatcaaaaccactcat |
113 |
Q |
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| T |
5686151 |
aatataaaggattaaggttggtctacttttaaaagagatagaatatttaagtatataaaatatggtacaattttgtccaatataaatcaaaaccactcat |
5686052 |
T |
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| Q |
114 |
ttccaattatcatctttcattattcacatggatgcatagtagcactatcattgtacaacataatataccactctttaataaaacatttggattatggt |
211 |
Q |
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| T |
5686051 |
ttccaattatcatctttcattattcacatggatgcatagtagcactatcattgtacaacataatataccactctttaataaaacatttggattatggt |
5685954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 5697881 - 5697735
Alignment:
| Q |
66 |
atataaaatatggtacaattttgtccaatataaatcaaaaccactcatttccaattatcatctttcattattcacatggatgcatagtagcactatcatt |
165 |
Q |
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| T |
5697881 |
atataaaacatggtacaattttgtccaatataaatccaaaccactcatttccaattatcatctttcattattcacatggatgcatagtaacactatcatt |
5697782 |
T |
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| Q |
166 |
gtacaacat-aatataccactctttaataaaacatttggattatggt |
211 |
Q |
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| T |
5697781 |
gtacaacataaatttaccactctttaataaaacatttggattatggt |
5697735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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